Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238027565
Identifier: 238027565
GI number: 238027565
Start: 2168660
End: 2169160
Strand: Reverse
Name: 238027565
Synonym: bglu_1g19830
Alternate gene names: NA
Gene position: 2169160-2168660 (Counterclockwise)
Preceding gene: 238027566
Following gene: 238027564
Centisome position: 55.53
GC content: 56.49
Gene sequence:
>501_bases ATGATTCTGATTTTGAGCGTCGCGGTATTCCTGGCGTGGGTCACGATGGTTGCGGCTGGTGATATTCGTTATCGGCGTAT TCCCAATTCTTTGGTAGTGGCCGGTTTGATCTGCGGAATGGTATCGACCATTAGCCGCTACAACCCGTTTGGCATAACAC CGGTCGAGGCGGTAATCGGGGCCGTGATCGGATTCGTCGGATTGTTTCCGTTTTTCGCATGCCGCCTGATGGGGGCTGCA GATGTGAAGGTATTTACTGTGCTCGGGTTGTGGTGCGGATTTCAGGGTTTGTTCTGGTGCTGGATTGCCGCGAGTCTGGC GGCATTGATTCACGTGCTCGGCATGATGTACTGGACCCGTACGCCGATCGGGGCATTGTGGCAGCGCGGGTCGCCGACAT TGGCGCTCGGTGCGCGTCGCGGTTCGCCTTATGCGGCGTTTCTCGTCATAGCGGCGGCCGCGTGGTTGATATATCTGATC GTTACGGGGAATTTGCGATGA
Upstream 100 bases:
>100_bases GCGGCTCGAGCAGCTAACCCGATCCTGCTGTTCCGCATGCGGATGCGCGGGTCGCCGGTTCGGCGCCCGCATTTGCCGTG CCCGCCTTTCGAGAATCGGA
Downstream 100 bases:
>100_bases GGCCGCTACTTCACGCACCGCTGCGCCGCAGTCAGCGCGGCTCGATGTCGGTCGAATTCGCCCTGATCCTGCCGGCGTTC TTCATGGTGCTTTACGCGGT
Product: peptidase A24A, prepilin type IV
Products: NA
Alternate protein names: Prepilin Peptidase Transmembrane Protein CpaA Like; Type II Secretory Pathway Prepilin Signal Peptidase PulO
Number of amino acids: Translated: 166; Mature: 166
Protein sequence:
>166_residues MILILSVAVFLAWVTMVAAGDIRYRRIPNSLVVAGLICGMVSTISRYNPFGITPVEAVIGAVIGFVGLFPFFACRLMGAA DVKVFTVLGLWCGFQGLFWCWIAASLAALIHVLGMMYWTRTPIGALWQRGSPTLALGARRGSPYAAFLVIAAAAWLIYLI VTGNLR
Sequences:
>Translated_166_residues MILILSVAVFLAWVTMVAAGDIRYRRIPNSLVVAGLICGMVSTISRYNPFGITPVEAVIGAVIGFVGLFPFFACRLMGAA DVKVFTVLGLWCGFQGLFWCWIAASLAALIHVLGMMYWTRTPIGALWQRGSPTLALGARRGSPYAAFLVIAAAAWLIYLI VTGNLR >Mature_166_residues MILILSVAVFLAWVTMVAAGDIRYRRIPNSLVVAGLICGMVSTISRYNPFGITPVEAVIGAVIGFVGLFPFFACRLMGAA DVKVFTVLGLWCGFQGLFWCWIAASLAALIHVLGMMYWTRTPIGALWQRGSPTLALGARRGSPYAAFLVIAAAAWLIYLI VTGNLR
Specific function: Unknown
COG id: COG4960
COG function: function code OU; Flp pilus assembly protein, protease CpaA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17943; Mature: 17943
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILILSVAVFLAWVTMVAAGDIRYRRIPNSLVVAGLICGMVSTISRYNPFGITPVEAVIG CHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH AVIGFVGLFPFFACRLMGAADVKVFTVLGLWCGFQGLFWCWIAASLAALIHVLGMMYWTR HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TPIGALWQRGSPTLALGARRGSPYAAFLVIAAAAWLIYLIVTGNLR CCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MILILSVAVFLAWVTMVAAGDIRYRRIPNSLVVAGLICGMVSTISRYNPFGITPVEAVIG CHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH AVIGFVGLFPFFACRLMGAADVKVFTVLGLWCGFQGLFWCWIAASLAALIHVLGMMYWTR HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TPIGALWQRGSPTLALGARRGSPYAAFLVIAAAAWLIYLIVTGNLR CCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA