Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238027529
Identifier: 238027529
GI number: 238027529
Start: 2126410
End: 2126901
Strand: Reverse
Name: 238027529
Synonym: bglu_1g19460
Alternate gene names: NA
Gene position: 2126901-2126410 (Counterclockwise)
Preceding gene: 238027531
Following gene: 238027528
Centisome position: 54.45
GC content: 76.63
Gene sequence:
>492_bases ATGGACCTCGCTCACGATCTGCCGTCGATCCTCGCTCAGGCATATCCGCCCGTGTTCCCGCGCGTCGATACCGGCCGCGC CCGGGCGCTCGGCCTGCGGTCGCGCGAGGTGGCGGTGGCGCGCGGCCACGCCGTGGCGATCGACCTCGGCATCTTTGGCC CGCCGCGCTTCCTTGCGGCGCTCGCCGGCCAGAGGCCGGACGAGCTCGCCCGGATCGGGCGCAGGCGCAACACGGTCGCG CATTGTCGGCGCAGCTCGTATGCGATCGGCCTGCGCCTCGAGCGGGCCGGCTCCAGGCGCGCCGCGAGGCAGGCGCTGCC GGCCGCCGGGCACGGCGGCGCGTTTTGCCCCGCCGTCGCGGGCGGGGGCGGCGCCGTCACGGTATCGCGCCTGCCGCAGC GCGCCGCTCGCGAGCCGATGGCGGAAGCGCTCAGCGGGCAACCCGGTCGTGCCTGCGCGGCACTCGTGCTTGCCGGGGAG CCCGCACGATGA
Upstream 100 bases:
>100_bases GCGTCGGGCGAGGCACCGCTGGGCTAGAATCTTCCCGCCGCGGGCGCCCGCGGCTCGAACCCCGGCTTTGTGGGCCGCTT CATCCGCTTCGACGATCTTC
Downstream 100 bases:
>100_bases AGCTGCCCGCCTATGCCTGGCTCGCGATCGCGATCGTTGCCGAGGTGATCGGCACGTCCGCGCTGCGCGCGTCCGAAGGA TTCACGCGGCTGATGCCAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 163; Mature: 163
Protein sequence:
>163_residues MDLAHDLPSILAQAYPPVFPRVDTGRARALGLRSREVAVARGHAVAIDLGIFGPPRFLAALAGQRPDELARIGRRRNTVA HCRRSSYAIGLRLERAGSRRAARQALPAAGHGGAFCPAVAGGGGAVTVSRLPQRAAREPMAEALSGQPGRACAALVLAGE PAR
Sequences:
>Translated_163_residues MDLAHDLPSILAQAYPPVFPRVDTGRARALGLRSREVAVARGHAVAIDLGIFGPPRFLAALAGQRPDELARIGRRRNTVA HCRRSSYAIGLRLERAGSRRAARQALPAAGHGGAFCPAVAGGGGAVTVSRLPQRAAREPMAEALSGQPGRACAALVLAGE PAR >Mature_163_residues MDLAHDLPSILAQAYPPVFPRVDTGRARALGLRSREVAVARGHAVAIDLGIFGPPRFLAALAGQRPDELARIGRRRNTVA HCRRSSYAIGLRLERAGSRRAARQALPAAGHGGAFCPAVAGGGGAVTVSRLPQRAAREPMAEALSGQPGRACAALVLAGE PAR
Specific function: Unknown
COG id: COG4702
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0303 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005624 - InterPro: IPR010371 [H]
Pfam domain/function: PF03928 DUF336 [H]
EC number: NA
Molecular weight: Translated: 16951; Mature: 16951
Theoretical pI: Translated: 12.12; Mature: 12.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLAHDLPSILAQAYPPVFPRVDTGRARALGLRSREVAVARGHAVAIDLGIFGPPRFLAA CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEEECCCCCHHHHHH LAGQRPDELARIGRRRNTVAHCRRSSYAIGLRLERAGSRRAARQALPAAGHGGAFCPAVA HHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCCCEEC GGGGAVTVSRLPQRAAREPMAEALSGQPGRACAALVLAGEPAR CCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCC >Mature Secondary Structure MDLAHDLPSILAQAYPPVFPRVDTGRARALGLRSREVAVARGHAVAIDLGIFGPPRFLAA CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEEECCCCCHHHHHH LAGQRPDELARIGRRRNTVAHCRRSSYAIGLRLERAGSRRAARQALPAAGHGGAFCPAVA HHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCCCEEC GGGGAVTVSRLPQRAAREPMAEALSGQPGRACAALVLAGEPAR CCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA