| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027140
Identifier: 238027140
GI number: 238027140
Start: 1686167
End: 1687504
Strand: Reverse
Name: 238027140
Synonym: bglu_1g15250
Alternate gene names: NA
Gene position: 1687504-1686167 (Counterclockwise)
Preceding gene: 238027141
Following gene: 238027139
Centisome position: 43.2
GC content: 62.33
Gene sequence:
>1338_bases ATGACTGAGCGATCTATCAATCTGGTCGTGCCGCTGGCCCACAAGGCCACCGCCATGCGCAATGAGGATACCGACCGCCA GCGTGCGGAGAGGTCCAGCGCAGTTTCCCGGCTGAGCAATCGGCCGGGCGACGTAGATAGCACGATACTTCCGGCTGGGC GTGGTGCCAGAACTTCAACAACGGCAACCAGAACAACAACCACCAGAACAACGAGTTCCGAGCCCGAGCCGTCCGCAGAT CGAGGGCCGATTTCGTTCGCCGAACTGGTCGAGGCATACCTCGACTGCCGGCGGACGAAGCGCAATTCCAACGCGGCACT GGCGTTCGAGATACGGCTCGAGCGCAACCTGCGCCGCCTGTACGACGAGCTGGTCAGCGGCAACTATACCCCTGGTCGCT CGAAGTGCTTCGTCATCACTCGACCCAAGCCGCGCGAAGTCTGGGCGGCTGCGTTTCGCGATCGCATTGTGCATCACCTG CTGTACAACCGGACCGGGCTGCGCTTCGAGCGATCGTTCATCGCCGACTCGTGCGCCTGCATCAAGGGGCGAGGCACGCT GTACGCTGCGCGTCGCCTCGAATCGAAGGTTCGCTCGATCACGCAAAACTGGTCGCGGCCGGCTTTCTACCTGAAGTGCG ACCTGGCCAACTTCTTCGTCAGCATCGACAAGCCGATCCTGCTCAAGCTGCTGCTCGCGAAGATTCCAGAGCCATTCTGG CGTACGCTGACCGAGCGCGTGTTGATGCACGATCCACGCACAGACTTCGAATTTCACGGCGATCCGCAGATGCTCGCGCT CGTGCCGCCGCACAAGCGGCTGCTCGAACAGGCCGGCCACCTAGGCTTGCCGATCGGCAATCTGTCGAGCCAGTTCTTCG CCAACGTCTATCTTGACGTGCTCGACCAGCATGCGAAGCAAGCGCTCGGCGCCAGGTACTACATCCGCTACGTGGATGAT TTCTTGTTCCTGCATGAGTCGCCGGCGCGGTTGAACGAAATCCTCGTCGACGTGACGGCCTTCCTGCCCGCGTGCTTGGG TGTCCGTATCAACCCGCGCAAGACGATCCTGCAGCCGATCGACCGCGGAGTCGACTTCGTAGGTCAGATGATCAAGCCGT GGCGTCGCGAGACGCGGAAGCGAACGCGAAATGAGGCGCTCCGGCGCGCCGCCGCTGTGCCGATCGATGACTTCCTCGCC GTGAGCAATTCCTATTTCGGCCTGATGCGCCAAGCAACCGCCAGCCACCAGGACCGCGCCGAGCTCGCCAACATCGCCCG TGCGCGCGGTCGTGCAGTCGATTCCCGGCTGACCAAAACCTTTCGCGGATCACGCTGA
Upstream 100 bases:
>100_bases GCATACGCCGGCGCAGTCGAGCAAACTACCAGCATCGGGAAGCAGGCCACCGGGTGGAGAAACGCCGCGCGTCGCCCGCT TCGTGGTGGTTAAGGCTGCC
Downstream 100 bases:
>100_bases GCAGGCGGGTCCCAAATATTCCTGTTTGGTGAGATACGAAACATGAAACACATCGCACAAAACCTTGCTCGCGCTCTGCT ATGCGTTACGACGATCGCGA
Product: retron-type reverse transcriptase
Products: NA
Alternate protein names: Retron-Type Reverse Transcriptase; Reverse Transcriptase Family Protein; Phage-Encoded Reverse Transcriptase
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MTERSINLVVPLAHKATAMRNEDTDRQRAERSSAVSRLSNRPGDVDSTILPAGRGARTSTTATRTTTTRTTSSEPEPSAD RGPISFAELVEAYLDCRRTKRNSNAALAFEIRLERNLRRLYDELVSGNYTPGRSKCFVITRPKPREVWAAAFRDRIVHHL LYNRTGLRFERSFIADSCACIKGRGTLYAARRLESKVRSITQNWSRPAFYLKCDLANFFVSIDKPILLKLLLAKIPEPFW RTLTERVLMHDPRTDFEFHGDPQMLALVPPHKRLLEQAGHLGLPIGNLSSQFFANVYLDVLDQHAKQALGARYYIRYVDD FLFLHESPARLNEILVDVTAFLPACLGVRINPRKTILQPIDRGVDFVGQMIKPWRRETRKRTRNEALRRAAAVPIDDFLA VSNSYFGLMRQATASHQDRAELANIARARGRAVDSRLTKTFRGSR
Sequences:
>Translated_445_residues MTERSINLVVPLAHKATAMRNEDTDRQRAERSSAVSRLSNRPGDVDSTILPAGRGARTSTTATRTTTTRTTSSEPEPSAD RGPISFAELVEAYLDCRRTKRNSNAALAFEIRLERNLRRLYDELVSGNYTPGRSKCFVITRPKPREVWAAAFRDRIVHHL LYNRTGLRFERSFIADSCACIKGRGTLYAARRLESKVRSITQNWSRPAFYLKCDLANFFVSIDKPILLKLLLAKIPEPFW RTLTERVLMHDPRTDFEFHGDPQMLALVPPHKRLLEQAGHLGLPIGNLSSQFFANVYLDVLDQHAKQALGARYYIRYVDD FLFLHESPARLNEILVDVTAFLPACLGVRINPRKTILQPIDRGVDFVGQMIKPWRRETRKRTRNEALRRAAAVPIDDFLA VSNSYFGLMRQATASHQDRAELANIARARGRAVDSRLTKTFRGSR >Mature_444_residues TERSINLVVPLAHKATAMRNEDTDRQRAERSSAVSRLSNRPGDVDSTILPAGRGARTSTTATRTTTTRTTSSEPEPSADR GPISFAELVEAYLDCRRTKRNSNAALAFEIRLERNLRRLYDELVSGNYTPGRSKCFVITRPKPREVWAAAFRDRIVHHLL YNRTGLRFERSFIADSCACIKGRGTLYAARRLESKVRSITQNWSRPAFYLKCDLANFFVSIDKPILLKLLLAKIPEPFWR TLTERVLMHDPRTDFEFHGDPQMLALVPPHKRLLEQAGHLGLPIGNLSSQFFANVYLDVLDQHAKQALGARYYIRYVDDF LFLHESPARLNEILVDVTAFLPACLGVRINPRKTILQPIDRGVDFVGQMIKPWRRETRKRTRNEALRRAAAVPIDDFLAV SNSYFGLMRQATASHQDRAELANIARARGRAVDSRLTKTFRGSR
Specific function: Unknown
COG id: COG3344
COG function: function code L; Retron-type reverse transcriptase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50663; Mature: 50532
Theoretical pI: Translated: 10.85; Mature: 10.85
Prosite motif: PS50878 RT_POL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTERSINLVVPLAHKATAMRNEDTDRQRAERSSAVSRLSNRPGDVDSTILPAGRGARTST CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC TATRTTTTRTTSSEPEPSADRGPISFAELVEAYLDCRRTKRNSNAALAFEIRLERNLRRL CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHH YDELVSGNYTPGRSKCFVITRPKPREVWAAAFRDRIVHHLLYNRTGLRFERSFIADSCAC HHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHE IKGRGTLYAARRLESKVRSITQNWSRPAFYLKCDLANFFVSIDKPILLKLLLAKIPEPFW ECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHCCHHHHHHHHHHHCCCHHH RTLTERVLMHDPRTDFEFHGDPQMLALVPPHKRLLEQAGHLGLPIGNLSSQFFANVYLDV HHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH LDQHAKQALGARYYIRYVDDFLFLHESPARLNEILVDVTAFLPACLGVRINPRKTILQPI HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH DRGVDFVGQMIKPWRRETRKRTRNEALRRAAAVPIDDFLAVSNSYFGLMRQATASHQDRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHH ELANIARARGRAVDSRLTKTFRGSR HHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TERSINLVVPLAHKATAMRNEDTDRQRAERSSAVSRLSNRPGDVDSTILPAGRGARTST CCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC TATRTTTTRTTSSEPEPSADRGPISFAELVEAYLDCRRTKRNSNAALAFEIRLERNLRRL CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHH YDELVSGNYTPGRSKCFVITRPKPREVWAAAFRDRIVHHLLYNRTGLRFERSFIADSCAC HHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHE IKGRGTLYAARRLESKVRSITQNWSRPAFYLKCDLANFFVSIDKPILLKLLLAKIPEPFW ECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHCCHHHHHHHHHHHCCCHHH RTLTERVLMHDPRTDFEFHGDPQMLALVPPHKRLLEQAGHLGLPIGNLSSQFFANVYLDV HHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH LDQHAKQALGARYYIRYVDDFLFLHESPARLNEILVDVTAFLPACLGVRINPRKTILQPI HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH DRGVDFVGQMIKPWRRETRKRTRNEALRRAAAVPIDDFLAVSNSYFGLMRQATASHQDRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHH ELANIARARGRAVDSRLTKTFRGSR HHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA