Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is tex [H]

Identifier: 238027085

GI number: 238027085

Start: 1611479

End: 1613809

Strand: Reverse

Name: tex [H]

Synonym: bglu_1g14640

Alternate gene names: 238027085

Gene position: 1613809-1611479 (Counterclockwise)

Preceding gene: 238027089

Following gene: 238027067

Centisome position: 41.31

GC content: 69.93

Gene sequence:

>2331_bases
ATGACGGAAACCGTAGCACTCAAGATCGTTCAGCGCATCGCCACCGAACTCGCGGTCCAGCCGCGTCAGGTCGCGGCAGC
CGTGCAACTTCTCGACGAAGGCGCCACCGTTCCGTTCATCGCCCGCTACCGCAAGGAGGTGACGGGCAACCTGGACGACA
CGCAACTGCGCCAACTCGAAGAGCGCCTGCTGTACCTGCGTGAGCTCGAGGATCGCCGCGCGACGATCCTCGCGAGCATC
GAGGAACAGGGCAAGCTGAGCGACGAACTGCGCGCGGCCATCGAGACCGCCGACAGCAAGCAGGTGCTCGAGGACCTGTA
CCTGCCCTACAAGCCGAAGCGCCGCACGCGCGCCCAGATCGCCCGCGAGGCCGGCCTCGAGCCGCTCGCGCAGGCACTGC
TCGCCAACCCGCTGCTCGACCCGCAGACCGAGGCCGCCGCCTACGTGAATGCCGAGCGGGGCGTGGCCGACCTGAAGGCG
GCGCTGGACGGCGCGCGCGACATCCTCTCCGAGCAGTTCGGCGAGACGGCCGAGCTGCTCGGCAGGCTGCGCGATTACCT
GCACGGTCAGGGCGTCGTGTCGTCGGCCGTGATCGAGGGCAAGGAAGGCGAGGAAGGCGAGAAGTTCCGCGACTATTACG
ACTACTCGGAAACGCTGAAGACGGTGCCCTCGCACCGCGCGCTCGCGCTGTTCCGCGGCCGCAACGCCGGCGTGCTGACC
GTCAAGCTCGGCCTCGGCGAGGAGCTCGACGCGCAGGTCCCGCATCCGGGCGAGGCGATGATCGCGCGCCATTTCGGCAT
CGCGAACCAGGGCCGGCCGGCCGACAAATGGCTGTCCGACGTCTGCCGCTGGTGCTGGCGCGTGAAGGTGCAGCCGCACC
TGGAAACCGAATTGCTCACGCAGTTGCGCGAGGACGCCGAGAGCGAGGCGATTCGCGTGTTCGCGCGCAATCTGAAGGAT
CTGCTGCTGGCCGCGCCGGCCGGCCCGAAAGCCGTGATCGGTCTCGACCCCGGCCTGCGCACCGGCGTGAAGGTGGCGGT
GGTCGATCGCACCGGCAAGGTGCTCGTCACCGATACGATCTACCCGCACGAGCCGCGCCGCGACTGGGACGGCTCGCTCG
CCAAGCTCGCGCGCATCGCCGCGCAAACGCAGGCGGAGCTGATCAGCATCGGCAACGGCACGGCCTCGCGCGAGACCGAC
CGGCTCGCGAGCGAACTGATCGCGAAGCACCCCGAACTGAAGCTGCAGAAGATCGTCGTGTCGGAAGCCGGCGCCTCGGT
CTATTCGGCCTCGGAGCTGGCCGCCAAGGAGTTCCCCGAGCTCGACGTGTCGCTGCGCGGCGCGGTGTCGATCGCACGGC
GCCTGCAGGACCCGCTCGCCGAGCTGGTCAAGATCGAGCCGAAGGCGATCGGCGTCGGCCAGTACCAGCACGACGTGAAC
CAGCGCGAGCTGGCGCGTTCACTCGACGCGGTGGTCGAGGACTGCGTGAACGCGGTCGGAGTGGACGCGAACACGGCCTC
GGCGCCGCTGCTCGCGCGCGTGTCGGGCCTGAACGCCACGCTCGCGCGCAACATCGTCGACTACCGCGACGCGAACGGCC
CGTTCCCGTCGCGCGAGCACCTGCGCCGCGTGCCGCGCCTCGGCGACAAGACCTTTGAGCAGGCGGCCGGCTTCCTGCGC
ATCAACGGCGGCGAGAATCCGCTCGACCGCTCCTCGGTGCACCCGGAAGCCTATCCCGTCGTCGAGCGGATGCTCGCGAA
GCTCAGCAAGCGCATCGACGACGTGCTCGGCAACCGCGACGCGCTGGCCGGCCTCTCGCCGGCCGAATTCGTCGATGACC
GCTTCGGCCTGCCCACCGTGCGCGACATCCTCGCCGAACTCGAGAAGCCGGGCCGCGATCCGCGCCCCGAATTCAAGACC
GCGACGTTCCGCGAGGGCGTCGAGAAGGTCTCCGACCTGCTGCCGGGAATGGTGCTGGAAGGCGTCGTGACCAACGTGGC
CGCGTTCGGCGCCTTCGTCGACATCGGCGTCCACCAGGACGGCCTAGTCCACGTCTCGGCGATGTCGACCAAATTCATCA
AGGACCCGCACGAGGTGGTGAAGGCCGGCCAGGTGGTCAAGGTCAAGGTGCTCGAGGTCGACGTCAAGCGCCAGCGGATC
GCGTTGACGATGCGCCTCGCCGACGAGGCGGGCGCCGCCGGCCCGGGCCGCGCCCCGGGTTCGGGCGCCGATCGCGGCGC
GCCGCGCGGCGGCGCCGGCCGGCCGCAGCGTTCGCGTGAGCCGGAACCGGCCGGCGCGATGGCCGCTGCGTTCGCCAAGC
TCAAGCGCTGA

Upstream 100 bases:

>100_bases
GCGCCCCGCATTTATGGCAAAATGCCCCGCTCCATTCACCCGCCCGGCCCGGTTCGCCGGCCACGGGCGTTCCAGCCGGC
CGTAGACGCACTCACACCCC

Downstream 100 bases:

>100_bases
CGGCGGCAGGCCGCAACGGTACGGATAGCGGGCCCGGCCTCGCTCGAGGCGGGCCTGTCTCTGGCGGATCGCCCGCACTG
ACTGGGGCGCGCGTCCATGA

Product: RNA binding S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 776; Mature: 775

Protein sequence:

>776_residues
MTETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLEERLLYLRELEDRRATILASI
EEQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKA
ALDGARDILSEQFGETAELLGRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLT
VKLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLTQLREDAESEAIRVFARNLKD
LLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTIYPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETD
RLASELIAKHPELKLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
QRELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREHLRRVPRLGDKTFEQAAGFLR
INGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRDALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKT
ATFREGVEKVSDLLPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRI
ALTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR

Sequences:

>Translated_776_residues
MTETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLEERLLYLRELEDRRATILASI
EEQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKA
ALDGARDILSEQFGETAELLGRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLT
VKLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLTQLREDAESEAIRVFARNLKD
LLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTIYPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETD
RLASELIAKHPELKLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
QRELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREHLRRVPRLGDKTFEQAAGFLR
INGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRDALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKT
ATFREGVEKVSDLLPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRI
ALTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR
>Mature_775_residues
TETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLEERLLYLRELEDRRATILASIE
EQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKAA
LDGARDILSEQFGETAELLGRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLTV
KLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLTQLREDAESEAIRVFARNLKDL
LLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTIYPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETDR
LASELIAKHPELKLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQ
RELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREHLRRVPRLGDKTFEQAAGFLRI
NGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRDALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKTA
TFREGVEKVSDLLPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRIA
LTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR

Specific function: Transcription accessory protein. Exact function not known [H]

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=793, Percent_Identity=33.6696090794451, Blast_Score=400, Evalue=1e-111,
Organism=Homo sapiens, GI27597090, Length=402, Percent_Identity=24.1293532338308, Blast_Score=82, Evalue=2e-15,
Organism=Escherichia coli, GI87082262, Length=755, Percent_Identity=63.046357615894, Blast_Score=922, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=40.7894736842105, Blast_Score=66, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=720, Percent_Identity=30.5555555555556, Blast_Score=262, Evalue=4e-70,
Organism=Saccharomyces cerevisiae, GI6321552, Length=217, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI62484314, Length=755, Percent_Identity=32.0529801324503, Blast_Score=363, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84431; Mature: 84300

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLE
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
ERLLYLRELEDRRATILASIEEQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
AREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKAALDGARDILSEQFGETAELL
HHHHCHHHHHHHHHHCCCCCCCCHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH
GRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLT
HHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE
VKLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLT
EEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
QLREDAESEAIRVFARNLKDLLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEECC
YPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETDRLASELIAKHPELKLQKIVV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
SEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
QRELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHH
LRRVPRLGDKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRD
HHHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
ALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLLPGMVLE
HHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
GVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRI
HHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHCCHHHHHHCCCEEEEEEEEEHHHHHHH
ALTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR
HHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLE
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
ERLLYLRELEDRRATILASIEEQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
AREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKAALDGARDILSEQFGETAELL
HHHHCHHHHHHHHHHCCCCCCCCHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH
GRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLT
HHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE
VKLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLT
EEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
QLREDAESEAIRVFARNLKDLLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEECC
YPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETDRLASELIAKHPELKLQKIVV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
SEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
QRELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHH
LRRVPRLGDKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRD
HHHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
ALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLLPGMVLE
HHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
GVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRI
HHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHCCHHHHHHCCCEEEEEEEEEHHHHHHH
ALTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR
HHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8755871; 12910271 [H]