| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is tex [H]
Identifier: 238027085
GI number: 238027085
Start: 1611479
End: 1613809
Strand: Reverse
Name: tex [H]
Synonym: bglu_1g14640
Alternate gene names: 238027085
Gene position: 1613809-1611479 (Counterclockwise)
Preceding gene: 238027089
Following gene: 238027067
Centisome position: 41.31
GC content: 69.93
Gene sequence:
>2331_bases ATGACGGAAACCGTAGCACTCAAGATCGTTCAGCGCATCGCCACCGAACTCGCGGTCCAGCCGCGTCAGGTCGCGGCAGC CGTGCAACTTCTCGACGAAGGCGCCACCGTTCCGTTCATCGCCCGCTACCGCAAGGAGGTGACGGGCAACCTGGACGACA CGCAACTGCGCCAACTCGAAGAGCGCCTGCTGTACCTGCGTGAGCTCGAGGATCGCCGCGCGACGATCCTCGCGAGCATC GAGGAACAGGGCAAGCTGAGCGACGAACTGCGCGCGGCCATCGAGACCGCCGACAGCAAGCAGGTGCTCGAGGACCTGTA CCTGCCCTACAAGCCGAAGCGCCGCACGCGCGCCCAGATCGCCCGCGAGGCCGGCCTCGAGCCGCTCGCGCAGGCACTGC TCGCCAACCCGCTGCTCGACCCGCAGACCGAGGCCGCCGCCTACGTGAATGCCGAGCGGGGCGTGGCCGACCTGAAGGCG GCGCTGGACGGCGCGCGCGACATCCTCTCCGAGCAGTTCGGCGAGACGGCCGAGCTGCTCGGCAGGCTGCGCGATTACCT GCACGGTCAGGGCGTCGTGTCGTCGGCCGTGATCGAGGGCAAGGAAGGCGAGGAAGGCGAGAAGTTCCGCGACTATTACG ACTACTCGGAAACGCTGAAGACGGTGCCCTCGCACCGCGCGCTCGCGCTGTTCCGCGGCCGCAACGCCGGCGTGCTGACC GTCAAGCTCGGCCTCGGCGAGGAGCTCGACGCGCAGGTCCCGCATCCGGGCGAGGCGATGATCGCGCGCCATTTCGGCAT CGCGAACCAGGGCCGGCCGGCCGACAAATGGCTGTCCGACGTCTGCCGCTGGTGCTGGCGCGTGAAGGTGCAGCCGCACC TGGAAACCGAATTGCTCACGCAGTTGCGCGAGGACGCCGAGAGCGAGGCGATTCGCGTGTTCGCGCGCAATCTGAAGGAT CTGCTGCTGGCCGCGCCGGCCGGCCCGAAAGCCGTGATCGGTCTCGACCCCGGCCTGCGCACCGGCGTGAAGGTGGCGGT GGTCGATCGCACCGGCAAGGTGCTCGTCACCGATACGATCTACCCGCACGAGCCGCGCCGCGACTGGGACGGCTCGCTCG CCAAGCTCGCGCGCATCGCCGCGCAAACGCAGGCGGAGCTGATCAGCATCGGCAACGGCACGGCCTCGCGCGAGACCGAC CGGCTCGCGAGCGAACTGATCGCGAAGCACCCCGAACTGAAGCTGCAGAAGATCGTCGTGTCGGAAGCCGGCGCCTCGGT CTATTCGGCCTCGGAGCTGGCCGCCAAGGAGTTCCCCGAGCTCGACGTGTCGCTGCGCGGCGCGGTGTCGATCGCACGGC GCCTGCAGGACCCGCTCGCCGAGCTGGTCAAGATCGAGCCGAAGGCGATCGGCGTCGGCCAGTACCAGCACGACGTGAAC CAGCGCGAGCTGGCGCGTTCACTCGACGCGGTGGTCGAGGACTGCGTGAACGCGGTCGGAGTGGACGCGAACACGGCCTC GGCGCCGCTGCTCGCGCGCGTGTCGGGCCTGAACGCCACGCTCGCGCGCAACATCGTCGACTACCGCGACGCGAACGGCC CGTTCCCGTCGCGCGAGCACCTGCGCCGCGTGCCGCGCCTCGGCGACAAGACCTTTGAGCAGGCGGCCGGCTTCCTGCGC ATCAACGGCGGCGAGAATCCGCTCGACCGCTCCTCGGTGCACCCGGAAGCCTATCCCGTCGTCGAGCGGATGCTCGCGAA GCTCAGCAAGCGCATCGACGACGTGCTCGGCAACCGCGACGCGCTGGCCGGCCTCTCGCCGGCCGAATTCGTCGATGACC GCTTCGGCCTGCCCACCGTGCGCGACATCCTCGCCGAACTCGAGAAGCCGGGCCGCGATCCGCGCCCCGAATTCAAGACC GCGACGTTCCGCGAGGGCGTCGAGAAGGTCTCCGACCTGCTGCCGGGAATGGTGCTGGAAGGCGTCGTGACCAACGTGGC CGCGTTCGGCGCCTTCGTCGACATCGGCGTCCACCAGGACGGCCTAGTCCACGTCTCGGCGATGTCGACCAAATTCATCA AGGACCCGCACGAGGTGGTGAAGGCCGGCCAGGTGGTCAAGGTCAAGGTGCTCGAGGTCGACGTCAAGCGCCAGCGGATC GCGTTGACGATGCGCCTCGCCGACGAGGCGGGCGCCGCCGGCCCGGGCCGCGCCCCGGGTTCGGGCGCCGATCGCGGCGC GCCGCGCGGCGGCGCCGGCCGGCCGCAGCGTTCGCGTGAGCCGGAACCGGCCGGCGCGATGGCCGCTGCGTTCGCCAAGC TCAAGCGCTGA
Upstream 100 bases:
>100_bases GCGCCCCGCATTTATGGCAAAATGCCCCGCTCCATTCACCCGCCCGGCCCGGTTCGCCGGCCACGGGCGTTCCAGCCGGC CGTAGACGCACTCACACCCC
Downstream 100 bases:
>100_bases CGGCGGCAGGCCGCAACGGTACGGATAGCGGGCCCGGCCTCGCTCGAGGCGGGCCTGTCTCTGGCGGATCGCCCGCACTG ACTGGGGCGCGCGTCCATGA
Product: RNA binding S1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 776; Mature: 775
Protein sequence:
>776_residues MTETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLEERLLYLRELEDRRATILASI EEQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKA ALDGARDILSEQFGETAELLGRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLT VKLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLTQLREDAESEAIRVFARNLKD LLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTIYPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETD RLASELIAKHPELKLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN QRELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREHLRRVPRLGDKTFEQAAGFLR INGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRDALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKT ATFREGVEKVSDLLPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRI ALTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR
Sequences:
>Translated_776_residues MTETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLEERLLYLRELEDRRATILASI EEQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKA ALDGARDILSEQFGETAELLGRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLT VKLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLTQLREDAESEAIRVFARNLKD LLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTIYPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETD RLASELIAKHPELKLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN QRELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREHLRRVPRLGDKTFEQAAGFLR INGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRDALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKT ATFREGVEKVSDLLPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRI ALTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR >Mature_775_residues TETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLEERLLYLRELEDRRATILASIE EQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKAA LDGARDILSEQFGETAELLGRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLTV KLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLTQLREDAESEAIRVFARNLKDL LLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTIYPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETDR LASELIAKHPELKLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQ RELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREHLRRVPRLGDKTFEQAAGFLRI NGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRDALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKTA TFREGVEKVSDLLPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRIA LTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR
Specific function: Transcription accessory protein. Exact function not known [H]
COG id: COG2183
COG function: function code K; Transcriptional accessory protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Homo sapiens, GI221136781, Length=793, Percent_Identity=33.6696090794451, Blast_Score=400, Evalue=1e-111, Organism=Homo sapiens, GI27597090, Length=402, Percent_Identity=24.1293532338308, Blast_Score=82, Evalue=2e-15, Organism=Escherichia coli, GI87082262, Length=755, Percent_Identity=63.046357615894, Blast_Score=922, Evalue=0.0, Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=40.7894736842105, Blast_Score=66, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17511129, Length=720, Percent_Identity=30.5555555555556, Blast_Score=262, Evalue=4e-70, Organism=Saccharomyces cerevisiae, GI6321552, Length=217, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI62484314, Length=755, Percent_Identity=32.0529801324503, Blast_Score=363, Evalue=1e-100,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR005227 - InterPro: IPR006641 - InterPro: IPR022967 - InterPro: IPR018974 - InterPro: IPR023097 [H]
Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]
EC number: NA
Molecular weight: Translated: 84431; Mature: 84300
Theoretical pI: Translated: 6.48; Mature: 6.48
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLE CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH ERLLYLRELEDRRATILASIEEQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQI HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH AREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKAALDGARDILSEQFGETAELL HHHHCHHHHHHHHHHCCCCCCCCHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH GRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLT HHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE VKLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLT EEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH QLREDAESEAIRVFARNLKDLLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTI HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEECC YPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETDRLASELIAKHPELKLQKIVV CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH SEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC QRELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREH HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHH LRRVPRLGDKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRD HHHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH ALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLLPGMVLE HHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH GVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRI HHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHCCHHHHHHCCCEEEEEEEEEHHHHHHH ALTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR HHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure TETVALKIVQRIATELAVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRQLE CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH ERLLYLRELEDRRATILASIEEQGKLSDELRAAIETADSKQVLEDLYLPYKPKRRTRAQI HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH AREAGLEPLAQALLANPLLDPQTEAAAYVNAERGVADLKAALDGARDILSEQFGETAELL HHHHCHHHHHHHHHHCCCCCCCCHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH GRLRDYLHGQGVVSSAVIEGKEGEEGEKFRDYYDYSETLKTVPSHRALALFRGRNAGVLT HHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE VKLGLGEELDAQVPHPGEAMIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHLETELLT EEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH QLREDAESEAIRVFARNLKDLLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLVTDTI HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEECC YPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETDRLASELIAKHPELKLQKIVV CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH SEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC QRELARSLDAVVEDCVNAVGVDANTASAPLLARVSGLNATLARNIVDYRDANGPFPSREH HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHH LRRVPRLGDKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKLSKRIDDVLGNRD HHHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH ALAGLSPAEFVDDRFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLLPGMVLE HHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH GVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRI HHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHCCHHHHHHCCCEEEEEEEEEHHHHHHH ALTMRLADEAGAAGPGRAPGSGADRGAPRGGAGRPQRSREPEPAGAMAAAFAKLKR HHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8755871; 12910271 [H]