| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is rpmE2 [H]
Identifier: 238027050
GI number: 238027050
Start: 1573615
End: 1573875
Strand: Reverse
Name: rpmE2 [H]
Synonym: bglu_1g14290
Alternate gene names: 238027050
Gene position: 1573875-1573615 (Counterclockwise)
Preceding gene: 238027051
Following gene: 238027049
Centisome position: 40.29
GC content: 59.0
Gene sequence:
>261_bases ATGAAACCGGGCATCCATCCGAATTACCGCGAAGTCGTCTTCCAGGACATGTCGAACGGCTTCAAGTTCATCACGCGCTC GACCATCCAGACGCGCGAAACGATCGAACTCGACGGCAAGACCTACCCGCTCGCCAAGATCGAAGTGTCGTCGGAGTCGC ACTCGTTCTACACGGGCCAGCAGAAGATCATGGACACGGCCGGCCGTGTCGAGAAGTTCAAGAACAAGTTCGGCGCGCGC GCCAACGGCAAGGCGGCGTAA
Upstream 100 bases:
>100_bases CGTCGTTTTTCGACCTAAGGCAAGTGGCTCGCAACGGCGCAGCGTCCGGTTCGACGGATTCGCGCGGCGGGTTGGCTACC GCTCCATTACAGGAAACATC
Downstream 100 bases:
>100_bases GCTCGCCGCGCGATACCGGCGGCGGCATCGCCGGTTCGAACCAAAAGGGCAGCCCAGGCTGCCCTTTTTTCGTCTGCGCG CTTGCGGCACCGCCCGCGCG
Product: 50S ribosomal protein L31 type B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 86; Mature: 86
Protein sequence:
>86_residues MKPGIHPNYREVVFQDMSNGFKFITRSTIQTRETIELDGKTYPLAKIEVSSESHSFYTGQQKIMDTAGRVEKFKNKFGAR ANGKAA
Sequences:
>Translated_86_residues MKPGIHPNYREVVFQDMSNGFKFITRSTIQTRETIELDGKTYPLAKIEVSSESHSFYTGQQKIMDTAGRVEKFKNKFGAR ANGKAA >Mature_86_residues MKPGIHPNYREVVFQDMSNGFKFITRSTIQTRETIELDGKTYPLAKIEVSSESHSFYTGQQKIMDTAGRVEKFKNKFGAR ANGKAA
Specific function: Unknown
COG id: COG0254
COG function: function code J; Ribosomal protein L31
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribosomal protein L31P family. Type B subfamily [H]
Homologues:
Organism=Escherichia coli, GI2367109, Length=78, Percent_Identity=52.5641025641026, Blast_Score=83, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002150 [H]
Pfam domain/function: PF01197 Ribosomal_L31 [H]
EC number: NA
Molecular weight: Translated: 9731; Mature: 9731
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPGIHPNYREVVFQDMSNGFKFITRSTIQTRETIELDGKTYPLAKIEVSSESHSFYTGQ CCCCCCCCHHHHHHHHHCCCCEEEHHCCCCCCCEEEECCCCCCEEEEEECCCCCCEECCH QKIMDTAGRVEKFKNKFGARANGKAA HHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKPGIHPNYREVVFQDMSNGFKFITRSTIQTRETIELDGKTYPLAKIEVSSESHSFYTGQ CCCCCCCCHHHHHHHHHCCCCEEEHHCCCCCCCEEEECCCCCCEEEEEECCCCCCEECCH QKIMDTAGRVEKFKNKFGARANGKAA HHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA