| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is arnT [H]
Identifier: 238027034
GI number: 238027034
Start: 1553619
End: 1555313
Strand: Reverse
Name: arnT [H]
Synonym: bglu_1g14120
Alternate gene names: 238027034
Gene position: 1555313-1553619 (Counterclockwise)
Preceding gene: 238027035
Following gene: 238027033
Centisome position: 39.81
GC content: 68.73
Gene sequence:
>1695_bases ATGAACGATACGCCATCGAGGCTACCGCTCAACCGTGCCGTACTTTTCCTGATCCTGCTAGCGTTCGCCGCGATCTGGTT CGGCCCGCTCGGGCTGCGCCACCTGATCCCCAGCGATGAGGGCCGCTACGCCGAAATGGCGCGCGAGATGTTCGTGACCG GCGACTGGATCACGCCGCGCTACAACGGCTACAAGTATTTCGAAAAACCGCCGCTGCAGACCTGGCTGAACGCGCTGACG TTCGCCTGGTTCGGAATCGGCGAGTGGCAAGCACGGCTCTACACCGCGCTCGCGAGCTTCGCCGGCGTGCTGCTGGTCGG CTATACCGGGGCGCGCGTGTTCAATCCGCTGGCCGGCTTCTGCGCGGCGGTGGTGCTCGCCGCGTCGCCGTACTGGAACC TGATGGGCCACTTCAACACGCTCGACATGGGCCTGTCGTTCTGGATGGCCGTCACGCTCTGCGCGCTGCTGCTGGCGCAG CGCCCGGGCCTGACGGTGCGCGCCACGCGCGGCTGGATGTGGCTGTGCTGGGCCTCGATGGCGCTCGCGGTGCTGTCCAA GGGGCTGGTCGGCGTGATCCTGCCCGGCGCGGTGCTGGTGCTCTACACGCTGATTGCGCGCGACTGGGCGCTCTGGCGGC GCCTGTACCTGGTGAGCGGCATCGTGATCTTCTTCGCGATCGTCGCGCCGTGGTTCGTGCTGGTCCAGCAGCGCAACCCC GAATTCTTCAACTTCTTCTTCGTGGTCCAGCAGTTCCGCCGCTACCTGACGCCCGAGCAGAACCGGCCGGGCCCGGTCTA CTATTTCGTCGGCGTGCTGCTGGTGGGCTTCCTGCCGTGGCTGTCGGTCGCCGTGCAGAGCCTGCGCCATGCATGGCGCA TGCCGCGCCAGCCGAACGGCTTCGCGCCGATGACGGTGCTGCTGGTCTGGAGCGGCTTCATCTTCCTGTTCTTCAGCGTC TCGCACTCGAAGCTGGTGTCGTATGTCCTGCCGATCGCGCCGTCGCTCGCCCTGCTGCTGGGCGCCTACCTGCCGCTCGT CTCGCGCGAGCACTACCGCCGCCATCTGCTCGGCTACCTGGTGTTCCTGGTGGCGGCCGCCGGCGGCTCGATCGTGCTCG GCCGCCTTGGCGACGCGCGCACTCCGAACGCGCTCTACGTCAGCTTCCAGCACTGGGTCTACGCGGCGCTCGCGGTCGCG TTCGTGCTCACCCTCGTCGCGCTGTGGGTGAACCGCCGTGCGCGGGCCGGCATCGCCGCGACGGCGCTGGTGTTCGGCGC CGGCTGGCTGCTGCTCGGCACCATCGGCGGCACCGGCCACGATGCGTTCGGCCGCTACAGCTCGGGCGCGCTGCTCGCGC CGGCGGTGCGCGCCGCATTCGCGAAGCTGCCGCCCGGCACGCCGTTCTACTCGATCGAGATGCTCGACCACACGCTGCCG TTCTACGTCGGCCACACCACCACGCTGGTCGCCTACCAGGACGAACTCGCGTTCGGCATCTCGCAGCAGCCTGAAAAATG GGTGCCGACCATCGCGGAATGGGAGCGCCGCTGGCGCGCCGAGCCGGCCGCACTCGCGGTGATGCGCCCCGAGCGCTACG CCGCGCTGGCCGCGCAAGGCCTGCCGATGACGGTGATCGCGCGCGACACGCGCCGCGTGATCGTCGAGAAACCCATGGCC AAGCCGCAATCCTGA
Upstream 100 bases:
>100_bases CGGCAACGCGGCCGCCCGCTGCCAATGATGGCTGCGTGGCCTTCGGGCCGCGCCGCTCTTGCCGATTCCGATTTCCGTTG TCTGACAGGCTGACCGACTC
Downstream 100 bases:
>100_bases GGACCTTCGCGCCGATGAATCCCGTTTCCCTCGTCTGCATCGTCACCGGCGTGCTGCTGAACGCCTGCGCGCAACTGCTG CTGAAGGCCGGCGTCAACGC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 564; Mature: 564
Protein sequence:
>564_residues MNDTPSRLPLNRAVLFLILLAFAAIWFGPLGLRHLIPSDEGRYAEMAREMFVTGDWITPRYNGYKYFEKPPLQTWLNALT FAWFGIGEWQARLYTALASFAGVLLVGYTGARVFNPLAGFCAAVVLAASPYWNLMGHFNTLDMGLSFWMAVTLCALLLAQ RPGLTVRATRGWMWLCWASMALAVLSKGLVGVILPGAVLVLYTLIARDWALWRRLYLVSGIVIFFAIVAPWFVLVQQRNP EFFNFFFVVQQFRRYLTPEQNRPGPVYYFVGVLLVGFLPWLSVAVQSLRHAWRMPRQPNGFAPMTVLLVWSGFIFLFFSV SHSKLVSYVLPIAPSLALLLGAYLPLVSREHYRRHLLGYLVFLVAAAGGSIVLGRLGDARTPNALYVSFQHWVYAALAVA FVLTLVALWVNRRARAGIAATALVFGAGWLLLGTIGGTGHDAFGRYSSGALLAPAVRAAFAKLPPGTPFYSIEMLDHTLP FYVGHTTTLVAYQDELAFGISQQPEKWVPTIAEWERRWRAEPAALAVMRPERYAALAAQGLPMTVIARDTRRVIVEKPMA KPQS
Sequences:
>Translated_564_residues MNDTPSRLPLNRAVLFLILLAFAAIWFGPLGLRHLIPSDEGRYAEMAREMFVTGDWITPRYNGYKYFEKPPLQTWLNALT FAWFGIGEWQARLYTALASFAGVLLVGYTGARVFNPLAGFCAAVVLAASPYWNLMGHFNTLDMGLSFWMAVTLCALLLAQ RPGLTVRATRGWMWLCWASMALAVLSKGLVGVILPGAVLVLYTLIARDWALWRRLYLVSGIVIFFAIVAPWFVLVQQRNP EFFNFFFVVQQFRRYLTPEQNRPGPVYYFVGVLLVGFLPWLSVAVQSLRHAWRMPRQPNGFAPMTVLLVWSGFIFLFFSV SHSKLVSYVLPIAPSLALLLGAYLPLVSREHYRRHLLGYLVFLVAAAGGSIVLGRLGDARTPNALYVSFQHWVYAALAVA FVLTLVALWVNRRARAGIAATALVFGAGWLLLGTIGGTGHDAFGRYSSGALLAPAVRAAFAKLPPGTPFYSIEMLDHTLP FYVGHTTTLVAYQDELAFGISQQPEKWVPTIAEWERRWRAEPAALAVMRPERYAALAAQGLPMTVIARDTRRVIVEKPMA KPQS >Mature_564_residues MNDTPSRLPLNRAVLFLILLAFAAIWFGPLGLRHLIPSDEGRYAEMAREMFVTGDWITPRYNGYKYFEKPPLQTWLNALT FAWFGIGEWQARLYTALASFAGVLLVGYTGARVFNPLAGFCAAVVLAASPYWNLMGHFNTLDMGLSFWMAVTLCALLLAQ RPGLTVRATRGWMWLCWASMALAVLSKGLVGVILPGAVLVLYTLIARDWALWRRLYLVSGIVIFFAIVAPWFVLVQQRNP EFFNFFFVVQQFRRYLTPEQNRPGPVYYFVGVLLVGFLPWLSVAVQSLRHAWRMPRQPNGFAPMTVLLVWSGFIFLFFSV SHSKLVSYVLPIAPSLALLLGAYLPLVSREHYRRHLLGYLVFLVAAAGGSIVLGRLGDARTPNALYVSFQHWVYAALAVA FVLTLVALWVNRRARAGIAATALVFGAGWLLLGTIGGTGHDAFGRYSSGALLAPAVRAAFAKLPPGTPFYSIEMLDHTLP FYVGHTTTLVAYQDELAFGISQQPEKWVPTIAEWERRWRAEPAALAVMRPERYAALAAQGLPMTVIARDTRRVIVEKPMA KPQS
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=345, Percent_Identity=28.9855072463768, Blast_Score=139, Evalue=5e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 62957; Mature: 62957
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDTPSRLPLNRAVLFLILLAFAAIWFGPLGLRHLIPSDEGRYAEMAREMFVTGDWITPR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC YNGYKYFEKPPLQTWLNALTFAWFGIGEWQARLYTALASFAGVLLVGYTGARVFNPLAGF CCCEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH CAAVVLAASPYWNLMGHFNTLDMGLSFWMAVTLCALLLAQRPGLTVRATRGWMWLCWASM HHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH ALAVLSKGLVGVILPGAVLVLYTLIARDWALWRRLYLVSGIVIFFAIVAPWFVLVQQRNP HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EFFNFFFVVQQFRRYLTPEQNRPGPVYYFVGVLLVGFLPWLSVAVQSLRHAWRMPRQPNG HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC FAPMTVLLVWSGFIFLFFSVSHSKLVSYVLPIAPSLALLLGAYLPLVSREHYRRHLLGYL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFLVAAAGGSIVLGRLGDARTPNALYVSFQHWVYAALAVAFVLTLVALWVNRRARAGIAA HHHHHHCCCCEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHH TALVFGAGWLLLGTIGGTGHDAFGRYSSGALLAPAVRAAFAKLPPGTPFYSIEMLDHTLP HHHHHHCCHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHCCCC FYVGHTTTLVAYQDELAFGISQQPEKWVPTIAEWERRWRAEPAALAVMRPERYAALAAQG EEECCCEEEEEEHHHHHCCCCCCCHHCCCCHHHHHHHHCCCCHHEEEECCHHHHHHHHCC LPMTVIARDTRRVIVEKPMAKPQS CCEEEEECCHHHHHHHCCCCCCCC >Mature Secondary Structure MNDTPSRLPLNRAVLFLILLAFAAIWFGPLGLRHLIPSDEGRYAEMAREMFVTGDWITPR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC YNGYKYFEKPPLQTWLNALTFAWFGIGEWQARLYTALASFAGVLLVGYTGARVFNPLAGF CCCEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH CAAVVLAASPYWNLMGHFNTLDMGLSFWMAVTLCALLLAQRPGLTVRATRGWMWLCWASM HHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH ALAVLSKGLVGVILPGAVLVLYTLIARDWALWRRLYLVSGIVIFFAIVAPWFVLVQQRNP HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EFFNFFFVVQQFRRYLTPEQNRPGPVYYFVGVLLVGFLPWLSVAVQSLRHAWRMPRQPNG HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC FAPMTVLLVWSGFIFLFFSVSHSKLVSYVLPIAPSLALLLGAYLPLVSREHYRRHLLGYL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFLVAAAGGSIVLGRLGDARTPNALYVSFQHWVYAALAVAFVLTLVALWVNRRARAGIAA HHHHHHCCCCEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHH TALVFGAGWLLLGTIGGTGHDAFGRYSSGALLAPAVRAAFAKLPPGTPFYSIEMLDHTLP HHHHHHCCHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHCCCC FYVGHTTTLVAYQDELAFGISQQPEKWVPTIAEWERRWRAEPAALAVMRPERYAALAAQG EEECCCEEEEEEHHHHHCCCCCCCHHCCCCHHHHHHHHCCCCHHEEEECCHHHHHHHHCC LPMTVIARDTRRVIVEKPMAKPQS CCEEEEECCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA