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The map label for this gene is arnD [H]

Identifier: 238027028

GI number: 238027028

Start: 1547956

End: 1548852

Strand: Reverse

Name: arnD [H]

Synonym: bglu_1g14060

Alternate gene names: 238027028

Gene position: 1548852-1547956 (Counterclockwise)

Preceding gene: 238027029

Following gene: 238027027

Centisome position: 39.65

GC content: 70.12

Gene sequence:

>897_bases
TTGGCCCGCATCGTCCTCAAGATCGACGTCGACACGCTGCGCGGCACGCGCGAGGGTGTGCCGAACCTCGCGCGGATCTT
CGATCGCTACGCCGCGCGCGCGACCTTCCTGTTCAGCCTCGGCCCCGACCACACCGGCTGGGCGATGCGCCGCGTGCTGC
GGCCGGGCTTCCTGAAGAAGGTCTCGCGCACCTCGGTGGTCGAGCACTACGGCATCCGCCAGCTGATGTACGGCGTGCTG
CTGCCGGGGCCGGACATCGGCCGCCGCGCGGCGGCCGAGATGCGCGCGATCCACGAAGCAGGCTTCGAGTGCGGCATTCA
CACCTGGGATCACGTCTACTGGCAGGACAACGTGCGCGGGCGCGAACGCGCCTGGACTGCGCGCGAGATGGGCAAGAGCC
ATGCGCGCTTCGTCGAGATATTCGGCGCGCCGCCGGCCACGCACGGCGCGGCCGGCTGGCAGATGAACGACGCCGCGTTC
GAGCAGATCGACGCCTGGGGCATGCGCTACGCGTCCGACGGCCGGGGCCACGGGCCCTACCGTCCGGTGGTGGCGGGCCG
CACGCTCGGCCACGTGCAGCTGCCGACCACGCTGCCGACGCTCGACGAAGTGCTGGGCGTCGACGGCGTGGATGAGTCGA
ACGTGGCCGCCCACCTGCTCGCGCGCACCGAACGCAATCCGCACGACCAGGTGTTTACGCTGCACGCCGAGCTGGAAGGC
CAGAAGCTCGCGCCGGTATTCGAGCAACTGCTCGCCGGCTGGCGCGCGCAGGGCCACACGTTCGCGACGATGGGCGACTA
TCATGCCGCGCTGGATTTCGACACGCTGCCATCGTACCCTGTTACGTGGGGCGAAATCCCAGGTCGCTCCGGCGAGCTGA
TCGTCCAGCCCGGCTGA

Upstream 100 bases:

>100_bases
CCGGAGACGACGTTCGACGACGCGCTGCGCAACATCTTCGAGGCGTACCGCGGCCACGTGGCCGACGCGCGCGCGCTGGT
CGAGCAGCAAGGCTGACGCG

Downstream 100 bases:

>100_bases
ACGGTTCGCCGCGGTTTCCGTCATGCCCGGCCGGCCCAGCGCCGCGCCGCCGATAACAACAGGAGAATTTCCGTGTCAGT
CGAAATCGACCGCCCAGTTC

Product: putative xylanase/chitin deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MARIVLKIDVDTLRGTREGVPNLARIFDRYAARATFLFSLGPDHTGWAMRRVLRPGFLKKVSRTSVVEHYGIRQLMYGVL
LPGPDIGRRAAAEMRAIHEAGFECGIHTWDHVYWQDNVRGRERAWTAREMGKSHARFVEIFGAPPATHGAAGWQMNDAAF
EQIDAWGMRYASDGRGHGPYRPVVAGRTLGHVQLPTTLPTLDEVLGVDGVDESNVAAHLLARTERNPHDQVFTLHAELEG
QKLAPVFEQLLAGWRAQGHTFATMGDYHAALDFDTLPSYPVTWGEIPGRSGELIVQPG

Sequences:

>Translated_298_residues
MARIVLKIDVDTLRGTREGVPNLARIFDRYAARATFLFSLGPDHTGWAMRRVLRPGFLKKVSRTSVVEHYGIRQLMYGVL
LPGPDIGRRAAAEMRAIHEAGFECGIHTWDHVYWQDNVRGRERAWTAREMGKSHARFVEIFGAPPATHGAAGWQMNDAAF
EQIDAWGMRYASDGRGHGPYRPVVAGRTLGHVQLPTTLPTLDEVLGVDGVDESNVAAHLLARTERNPHDQVFTLHAELEG
QKLAPVFEQLLAGWRAQGHTFATMGDYHAALDFDTLPSYPVTWGEIPGRSGELIVQPG
>Mature_297_residues
ARIVLKIDVDTLRGTREGVPNLARIFDRYAARATFLFSLGPDHTGWAMRRVLRPGFLKKVSRTSVVEHYGIRQLMYGVLL
PGPDIGRRAAAEMRAIHEAGFECGIHTWDHVYWQDNVRGRERAWTAREMGKSHARFVEIFGAPPATHGAAGWQMNDAAFE
QIDAWGMRYASDGRGHGPYRPVVAGRTLGHVQLPTTLPTLDEVLGVDGVDESNVAAHLLARTERNPHDQVFTLHAELEGQ
KLAPVFEQLLAGWRAQGHTFATMGDYHAALDFDTLPSYPVTWGEIPGRSGELIVQPG

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=298, Percent_Identity=37.5838926174497, Blast_Score=178, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33107; Mature: 32976

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIVLKIDVDTLRGTREGVPNLARIFDRYAARATFLFSLGPDHTGWAMRRVLRPGFLKK
CCEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCHHHHH
VSRTSVVEHYGIRQLMYGVLLPGPDIGRRAAAEMRAIHEAGFECGIHTWDHVYWQDNVRG
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCC
RERAWTAREMGKSHARFVEIFGAPPATHGAAGWQMNDAAFEQIDAWGMRYASDGRGHGPY
HHHHHHHHHHCCHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCEECCCCCCCCCC
RPVVAGRTLGHVQLPTTLPTLDEVLGVDGVDESNVAAHLLARTERNPHDQVFTLHAELEG
CCEECCCCCCCEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCC
QKLAPVFEQLLAGWRAQGHTFATMGDYHAALDFDTLPSYPVTWGEIPGRSGELIVQPG
CCHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
ARIVLKIDVDTLRGTREGVPNLARIFDRYAARATFLFSLGPDHTGWAMRRVLRPGFLKK
CEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCHHHHH
VSRTSVVEHYGIRQLMYGVLLPGPDIGRRAAAEMRAIHEAGFECGIHTWDHVYWQDNVRG
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCC
RERAWTAREMGKSHARFVEIFGAPPATHGAAGWQMNDAAFEQIDAWGMRYASDGRGHGPY
HHHHHHHHHHCCHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCEECCCCCCCCCC
RPVVAGRTLGHVQLPTTLPTLDEVLGVDGVDESNVAAHLLARTERNPHDQVFTLHAELEG
CCEECCCCCCCEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCC
QKLAPVFEQLLAGWRAQGHTFATMGDYHAALDFDTLPSYPVTWGEIPGRSGELIVQPG
CCHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA