| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is hyi [H]
Identifier: 238027013
GI number: 238027013
Start: 1532693
End: 1533490
Strand: Reverse
Name: hyi [H]
Synonym: bglu_1g13910
Alternate gene names: 238027013
Gene position: 1533490-1532693 (Counterclockwise)
Preceding gene: 238027014
Following gene: 238027012
Centisome position: 39.25
GC content: 69.67
Gene sequence:
>798_bases ATGCCGAAATTCGCCGCCAACCTGACGATGCTGTTCAACGAAGTGCCGTTCCTCGAGCGGTTCGAGGCCGCCGCCGAGGC GGGCTTCGACGCCGTCGAGTTCCTGTTTCCGTACTCCTATGCGAAGGAGCAACTGGCCGAGCGGCTCGCCGCCCACCGCC TGAAGCTGGTGCTGCACAACCTGCCCGCCGGCAACTGGGACCAGGGCGAGCGCGGCATCGCCTGCCTGCCGGACCGGCGC GGCGAGTTTCAGGACGGCGTGGGCCGCGCGATCGACTATGCGAAGGCGCTCGGCGTGCCGCAGCTGAACTGCCTGGTCGG CATCGCGTCGGCCAGCGTGCCGCGCGACACCACCCACCTGACGATCGTCGAGAACCTGCGCTTCGCCGCCGACGCCCTCG AGCGCGAGGGCATCCGGCTGCTGGTGGAGCCGTGCAACCACTTCGACCTTCCCGGCTTCGCGCTGAACCGCTCGACCGAG GCGCTCGACGTGATCCGCGCGGTCGGCTCCGACAACCTGTTCCTGCAATACGACATCTATCACATGCAGCGCATGGAGGG CGAGCTCGCGGCGACGCTGCGCGCGAACCTGCCGGCGATCGGCCATGTCCAGCTGGCCGACAACCCGGGCCGCCACGAGC CCGGCACCGGCGAGATCCGCTACGCCTACCTGTTCGGCCTGCTCGACGAGCTCGGCTACCACGGCCATGTCGGCTGCGAG TACAAGCCACGCACCACCACCCGCGACGGGCTCGGCTGGCTGCGCGAGGCGAGGCAGTGCAGCGCCGCACACGCCTGA
Upstream 100 bases:
>100_bases AACGAGTTCGAGCCGCTCGCCGAGCGCCCCGAACACGCGCCGACCGCGATCTCGCTGCTCGACTGAGCCTGCTGCTTGCC GACCGACCGGAGACCCCGCC
Downstream 100 bases:
>100_bases CGCCCCTTTCTTACCCTCGCTACGGAGCACAACATGGCAACCATCGGTTTCATCGGCCTCGGCATCATGGGCTCGCACAT GGCGCGCAACCTGCTCAAGG
Product: hydroxypyruvate isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MPKFAANLTMLFNEVPFLERFEAAAEAGFDAVEFLFPYSYAKEQLAERLAAHRLKLVLHNLPAGNWDQGERGIACLPDRR GEFQDGVGRAIDYAKALGVPQLNCLVGIASASVPRDTTHLTIVENLRFAADALEREGIRLLVEPCNHFDLPGFALNRSTE ALDVIRAVGSDNLFLQYDIYHMQRMEGELAATLRANLPAIGHVQLADNPGRHEPGTGEIRYAYLFGLLDELGYHGHVGCE YKPRTTTRDGLGWLREARQCSAAHA
Sequences:
>Translated_265_residues MPKFAANLTMLFNEVPFLERFEAAAEAGFDAVEFLFPYSYAKEQLAERLAAHRLKLVLHNLPAGNWDQGERGIACLPDRR GEFQDGVGRAIDYAKALGVPQLNCLVGIASASVPRDTTHLTIVENLRFAADALEREGIRLLVEPCNHFDLPGFALNRSTE ALDVIRAVGSDNLFLQYDIYHMQRMEGELAATLRANLPAIGHVQLADNPGRHEPGTGEIRYAYLFGLLDELGYHGHVGCE YKPRTTTRDGLGWLREARQCSAAHA >Mature_264_residues PKFAANLTMLFNEVPFLERFEAAAEAGFDAVEFLFPYSYAKEQLAERLAAHRLKLVLHNLPAGNWDQGERGIACLPDRRG EFQDGVGRAIDYAKALGVPQLNCLVGIASASVPRDTTHLTIVENLRFAADALEREGIRLLVEPCNHFDLPGFALNRSTEA LDVIRAVGSDNLFLQYDIYHMQRMEGELAATLRANLPAIGHVQLADNPGRHEPGTGEIRYAYLFGLLDELGYHGHVGCEY KPRTTTRDGLGWLREARQCSAAHA
Specific function: Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde) [H]
COG id: COG3622
COG function: function code G; Hydroxypyruvate isomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hyi family [H]
Homologues:
Organism=Homo sapiens, GI300068962, Length=264, Percent_Identity=41.6666666666667, Blast_Score=190, Evalue=1e-48, Organism=Homo sapiens, GI300068964, Length=247, Percent_Identity=40.080971659919, Blast_Score=164, Evalue=1e-40, Organism=Escherichia coli, GI1786718, Length=258, Percent_Identity=56.9767441860465, Blast_Score=301, Evalue=3e-83, Organism=Escherichia coli, GI1789095, Length=258, Percent_Identity=43.0232558139535, Blast_Score=225, Evalue=3e-60, Organism=Caenorhabditis elegans, GI17552022, Length=240, Percent_Identity=39.5833333333333, Blast_Score=182, Evalue=1e-46, Organism=Drosophila melanogaster, GI17530883, Length=258, Percent_Identity=34.4961240310078, Blast_Score=154, Evalue=6e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017643 - InterPro: IPR013022 - InterPro: IPR012307 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =5.3.1.22 [H]
Molecular weight: Translated: 29388; Mature: 29256
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKFAANLTMLFNEVPFLERFEAAAEAGFDAVEFLFPYSYAKEQLAERLAAHRLKLVLHN CCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH LPAGNWDQGERGIACLPDRRGEFQDGVGRAIDYAKALGVPQLNCLVGIASASVPRDTTHL CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCCCEEE TIVENLRFAADALEREGIRLLVEPCNHFDLPGFALNRSTEALDVIRAVGSDNLFLQYDIY EHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEHHH HMQRMEGELAATLRANLPAIGHVQLADNPGRHEPGTGEIRYAYLFGLLDELGYHGHVGCE HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCE YKPRTTTRDGLGWLREARQCSAAHA ECCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PKFAANLTMLFNEVPFLERFEAAAEAGFDAVEFLFPYSYAKEQLAERLAAHRLKLVLHN CCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH LPAGNWDQGERGIACLPDRRGEFQDGVGRAIDYAKALGVPQLNCLVGIASASVPRDTTHL CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCCCEEE TIVENLRFAADALEREGIRLLVEPCNHFDLPGFALNRSTEALDVIRAVGSDNLFLQYDIY EHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEHHH HMQRMEGELAATLRANLPAIGHVQLADNPGRHEPGTGEIRYAYLFGLLDELGYHGHVGCE HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCE YKPRTTTRDGLGWLREARQCSAAHA ECCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8440684; 10561547; 9278503 [H]