| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238026996
Identifier: 238026996
GI number: 238026996
Start: 1516401
End: 1516883
Strand: Direct
Name: 238026996
Synonym: bglu_1g13740
Alternate gene names: NA
Gene position: 1516401-1516883 (Clockwise)
Preceding gene: 238026995
Following gene: 238026997
Centisome position: 38.82
GC content: 71.43
Gene sequence:
>483_bases ATGACGAGCACCGCTACGCCGCGCCAGACGCCGCCCGCCATCGAAAGCCCGTTCGTCGACATGCTCGGCGTGCGGCTCGT CTCGGCCCGGGACGGCGCGAGCGAGATCGCGCTGCCGCTCGAGGAGCGGCATCTCAACACCTGGAGCATCGCGCACGGCG GCGTGACGATGACGCTGGCCGACGTGGCGCTCGCGATGGCCGCGCGCAGCCTGACCGACGACGGCGTCGGCGTGGTCACC GTGGAGATGAAGGTCAACTTCATGCAGCCGGGCCGCGGCGAGCTGCGCGCCTACGGTCGCGTGATGCACCGCTCGACCAC CATGGCCTACTGCGAGGGCGAGGTGCGCGACAGCGCCGGCAATTTCGTCGCCAAGGCGATCGGCACCTTCAAGTACATGA AGCGGCTCGCGGTGGGCCGCGACGTCGCTCGCCAGCGCACGCGCACCGATCCGGGCGCGACGCCGGGGCCGAGCGACGTC TGA
Upstream 100 bases:
>100_bases GGAAGTGGAAGGAACCGGCCATGCGCGCCGCGCGCGCGGCCGGCGGCGGCGTGCCGTCCCCGCGTTTGCCCTCGCGGCCC AGGCCGGCACGGTGAGCGCC
Downstream 100 bases:
>100_bases GCCGCGGCCGTCCGGGGCCTCGCGCCGGCTGCGTTGGCCGATGCACGCAACGGCGCGCTGCCGGCCCGCAGCCGGCCGCG CGCCGCGCCGCGCGGCGCGG
Product: Thioesterase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MTSTATPRQTPPAIESPFVDMLGVRLVSARDGASEIALPLEERHLNTWSIAHGGVTMTLADVALAMAARSLTDDGVGVVT VEMKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSAGNFVAKAIGTFKYMKRLAVGRDVARQRTRTDPGATPGPSDV
Sequences:
>Translated_160_residues MTSTATPRQTPPAIESPFVDMLGVRLVSARDGASEIALPLEERHLNTWSIAHGGVTMTLADVALAMAARSLTDDGVGVVT VEMKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSAGNFVAKAIGTFKYMKRLAVGRDVARQRTRTDPGATPGPSDV >Mature_159_residues TSTATPRQTPPAIESPFVDMLGVRLVSARDGASEIALPLEERHLNTWSIAHGGVTMTLADVALAMAARSLTDDGVGVVTV EMKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSAGNFVAKAIGTFKYMKRLAVGRDVARQRTRTDPGATPGPSDV
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thioesterase PaaI family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003736 - InterPro: IPR006683 [H]
Pfam domain/function: PF03061 4HBT [H]
EC number: NA
Molecular weight: Translated: 17180; Mature: 17049
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTATPRQTPPAIESPFVDMLGVRLVSARDGASEIALPLEERHLNTWSIAHGGVTMTLA CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEECCHHHHCCCEEEEECCCEEHHHH DVALAMAARSLTDDGVGVVTVEMKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSAG HHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHEEECCCCCCCCH NFVAKAIGTFKYMKRLAVGRDVARQRTRTDPGATPGPSDV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TSTATPRQTPPAIESPFVDMLGVRLVSARDGASEIALPLEERHLNTWSIAHGGVTMTLA CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEECCHHHHCCCEEEEECCCEEHHHH DVALAMAARSLTDDGVGVVTVEMKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSAG HHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHEEECCCCCCCCH NFVAKAIGTFKYMKRLAVGRDVARQRTRTDPGATPGPSDV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11572479 [H]