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The map label for this gene is radA [H]

Identifier: 238026884

GI number: 238026884

Start: 1370007

End: 1371383

Strand: Direct

Name: radA [H]

Synonym: bglu_1g12520

Alternate gene names: 238026884

Gene position: 1370007-1371383 (Clockwise)

Preceding gene: 238026883

Following gene: 238026885

Centisome position: 35.07

GC content: 69.93

Gene sequence:

>1377_bases
GTGGCAAAACAGAAAACCGTCTACGTCTGTACTGCATGCGGCGGCCAGTCGCCGAAATGGCAGGGCCAGTGCCCGGCCTG
CCATGCCTGGAACACGCTGCTCGAATCGGCTGCCGAGACGCCGTCCTCGCACCGCTTCCAGGCGCTCGCCAAGAGCGCGC
CGGTGCAGCGCCTGGCCGACATCGACGCGGCCGACGTGCCGCGCTTCACGACCGGCATCGGCGAGTTCGATCGCGTGCTC
GGCGGCGGGCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGTC
GCTCGCGCAGCTCGCGAGCCAACGGCGCGCGCTCTACATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGCTGCGCGCGC
AGCGGCTCGCGCTGCTCGACCATGGCGGCGACGCGGCCGACCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCACGATCGACGCGGAGCGCCCCGACGTGGCCGTGATCGATTCGATCCAGACGGTCTATTCGGACGCGCTGTCGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCCAAGCAGTCCGGCACCGCGATCATAA
TGGTCGGTCACGTCACGAAGGAGGGCGCCCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACACGCATTCGTCGTACCGGCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGCTTGCGCGGCGTGGCGAACCCGTCCGCGCTGTTCCTCTCGCAGCACGAGGAGGTGGTGCCCG
GCTCCTGCGTGCTGGTCACGCAGGAGGGCTCGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTCGTCGACACCGCCAACGTG
CCGAATCCGCGCCGGCTCGCCGTCGGGCTCGAACAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCGGG
CATCGCCTGCTTCGATCAGGACGTGTTCCTGAATGCGGTGGGCGGCGTCAAGATCACCGAGCCGGCGGCCGATCTGGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGTAACAAAGCGTTGCCGAAGGGTCTGATCGTATTCGGCGAAGTGGGGCTGGCC
GGCGAGATCCGGCCGTCGCCGCGCGGCCAGGAGCGCCTGCGCGAGGCCGCCAAGCTGGGCTTCACGATGGCCCTGATTCC
CAAGGCCAACGCGCCCAAGCAGCCGATCGAGGGGCTCACCGTGATGGCCGTCGAGCGCATCGAGCAGGCCATCGACCGCG
TGCGCGGCCTCGAGTGA

Upstream 100 bases:

>100_bases
CCGGTCGACGACGTGGCCGCGCACTGCGCGACGGTGGGCTACGAACTGATGTGCGCGGTGGCCCAGCGCGTGCCGGTTCG
GGCGGAATAAGGGCGGGTTC

Downstream 100 bases:

>100_bases
GGCCGTGCGGCGCCCGCCGCGCGGTAACTCCATGTAACGTTTCCATGCACCGCTGTAACTCGTCGCGCCGCGGTTTTCCC
CTATGCTTGGCCGCATCGTG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MAKQKTVYVCTACGGQSPKWQGQCPACHAWNTLLESAAETPSSHRFQALAKSAPVQRLADIDAADVPRFTTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQ
ATIDAERPDVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTMALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE

Sequences:

>Translated_458_residues
MAKQKTVYVCTACGGQSPKWQGQCPACHAWNTLLESAAETPSSHRFQALAKSAPVQRLADIDAADVPRFTTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQ
ATIDAERPDVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTMALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE
>Mature_457_residues
AKQKTVYVCTACGGQSPKWQGQCPACHAWNTLLESAAETPSSHRFQALAKSAPVQRLADIDAADVPRFTTGIGEFDRVLG
GGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQA
TIDAERPDVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANVP
NPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLAG
EIRPSPRGQERLREAAKLGFTMALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=459, Percent_Identity=57.7342047930283, Blast_Score=528, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48596; Mature: 48464

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQKTVYVCTACGGQSPKWQGQCPACHAWNTLLESAAETPSSHRFQALAKSAPVQRLAD
CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHC
IDAADVPRFTTGIGEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYI
CCCCCCCCHHHCHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
SGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQATIDAERPDVAVIDSIQTVY
ECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SDALSSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHEEE
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEEVVPGSCVLVT
CCCCCCHHHHHHHHHHHCCCHHHCCHHEEHHHCCCCCCCCHHHEECCCCCCCCCCEEEEE
QEGSRPLLVEVQALVDTANVPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAV
CCCCCCEEEEHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCHHEEEC
GGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLAGEIRPSPRGQERLREAAKLG
CCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCC
FTMALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKQKTVYVCTACGGQSPKWQGQCPACHAWNTLLESAAETPSSHRFQALAKSAPVQRLAD
CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHC
IDAADVPRFTTGIGEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYI
CCCCCCCCHHHCHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
SGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQATIDAERPDVAVIDSIQTVY
ECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SDALSSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHEEE
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEEVVPGSCVLVT
CCCCCCHHHHHHHHHHHCCCHHHCCHHEEHHHCCCCCCCCHHHEECCCCCCCCCCEEEEE
QEGSRPLLVEVQALVDTANVPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAV
CCCCCCEEEEHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCHHEEEC
GGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLAGEIRPSPRGQERLREAAKLG
CCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCC
FTMALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]