Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is yejA [C]
Identifier: 238026859
GI number: 238026859
Start: 1338031
End: 1339857
Strand: Direct
Name: yejA [C]
Synonym: bglu_1g12270
Alternate gene names: 238026859
Gene position: 1338031-1339857 (Clockwise)
Preceding gene: 238026858
Following gene: 238026860
Centisome position: 34.25
GC content: 68.42
Gene sequence:
>1827_bases TTGACGGCCGTGCTGCTGGCCCTCTGCGGTGCCGCCGCGCCGCTTTCCGCCCACGCGGCCTATGCGATCGCCCAATACGG GGAGCCGAAATACCCGCCCGGCTTCCGGCATTTCGACTACGTGAATCCCGATGCGCCGAAGGGCGGTACGCTGGTGCTCG CGAACCCGAACCGGCTCACCACCTTCGACAAGTTCAATCCGTTCACGCTGCGCGGCAACCCGGCCCCCGGGCTCGGCACG ATCTTCGAAAGCCTGACCACCGGCAGCGCCGACGAGCCGGCGAGTGCCTATGGGCTGCTCGCCGACGACATCGCGATTGC CCCGGACCACCTGTCGGTGACGTTCCACCTGAACCCGCGCGCGCGCTTCTCGAACGGCGACCCGGTCACGGCGGCCGACG TCAAGTATTCGTTCGATACGCTGAAGAGCCCGCAGGCCGCGCCGCAGTATGCCGCCTATTTCTCCGAGATCGCGCGCGTG GTGGTGGTCGATCCGGCCACGGTACGCTTCGAGTTCACGCGCACCGACCGCGAGCTGCCGCTGATCGCGGGTGCCGTGCC GGTGTTCTCGCGCAAGTGGGGGGCGAGGCCGGACGGCACGCGGGTGCCGTTCGACCAGCTCGCGTTCCAGCCGCCGATCG GCAGCGGCCCCTATCTGATCGACCACTATGACAGCGGGCGCACCATCACTTACCGGCGCGATCCCCACTACTGGGGGGCC GCGCTGCCGGTGCGGGTCGGCACCGACAACTTCGACCGGATCGTCTACAAGCTCTATGGCGACAGCGTCGCGCGGCTCGA GGCCTTCAAGGCCGGCGAGTACGACGTGCTGGTCGAATACATCGCGCGCAACTGGGTACGGCGCGACGTGGGCAAGCGTT TCGACGACGGCGAGCTGATCAAGCGCGAGTTTCGCCAGCACAACGGCGCCGGCATGCAGGGCTTCCTGATGAACCTGCGC CGGCCGCTGTTTCAGGACGTGCGCGTGCGCGAGGCGCTCGATCTCGCATTCGATTTCGAATGGCTGAACCGGCAGCTGTT CTACGGCGGCTACACGCGCCTGAACAGCTACTTCGCCGACACCGAACTGCAGGCGCGCGGCACGCCGGGCGCGGGCGAGC TAGCGATCCTCGAGCCGCTGCGCAAGCAGCTCGACCCGGCCGTGTTCGGACCGATGCCGGTGCAGCCCGACACGAACCCG CCCGGCTCGCTGCGCGCCAATCTGCTCAAGGCGCGCGCGCTGCTGGCCGAGGCCGGCTGGACCTATCGCGACGGCGCGCT GCGCAACGCGAAGGGCGAGCCGTTCCGCTTCGAGATCCTCGACGATTCGGGCGGCGGGATGGAACCGGTGGTCACCGCCT ATCAGCGCAATCTTGCCAAGCTCGGCATCGAGGCGCGCTTTCGCACCGCCGATTTCGCGCTGCTGCAAAAGCGCCTCGAC GCGTTCGACTACGATATGACGACGGTGCGCTATCCGGGCGTGCAGGTGCCCGGCGCCGAGCAGGCCACGCGCTTCGCGAG CCGCTATGCGGACCAGCCCGGCTCGAGCAATCTGATCGGGCTGAAGTCGCCGGCCGTCGACGCGATCCTGAAGGCGCTGC TGCAGGCGCAGACGCGCGAGCAACTGCTCGACGCCACCCACGCGCTCGACCGCGTGCTGATGCACGGCTACTACGTGGTG CCGCAGTGGTACAGCACGGTGCACCGCGTCGCCTACCAGCACACGCTCGCCTATCCGGCCACGCTGCCGCTGTACTATTC GGCCGATGACTGGGTGGCGTCGATGTGGTGGGCGAAACCCGACGCGGCGGCGCACCCTGCACCTTGA
Upstream 100 bases:
>100_bases TTCCGCCTTCATGCCGACTTCCCCGTTTCGGGCCGCCGTGCCTCGTCGTGTTTCCGATGTCCGTGTCCCGGATGGCCGCG AGCCCGGCTGGTGGCGCTGG
Downstream 100 bases:
>100_bases GCGCCTCGCCGCATTCCGCATGCGGCGGCCGGGCCGGCCGCCGCTTCCTCAACCGCGCCGCGCGCGCCGCATGCCGACCT CGCCTATGTGGAGCTATATC
Product: family 5 extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 608; Mature: 607
Protein sequence:
>608_residues MTAVLLALCGAAAPLSAHAAYAIAQYGEPKYPPGFRHFDYVNPDAPKGGTLVLANPNRLTTFDKFNPFTLRGNPAPGLGT IFESLTTGSADEPASAYGLLADDIAIAPDHLSVTFHLNPRARFSNGDPVTAADVKYSFDTLKSPQAAPQYAAYFSEIARV VVVDPATVRFEFTRTDRELPLIAGAVPVFSRKWGARPDGTRVPFDQLAFQPPIGSGPYLIDHYDSGRTITYRRDPHYWGA ALPVRVGTDNFDRIVYKLYGDSVARLEAFKAGEYDVLVEYIARNWVRRDVGKRFDDGELIKREFRQHNGAGMQGFLMNLR RPLFQDVRVREALDLAFDFEWLNRQLFYGGYTRLNSYFADTELQARGTPGAGELAILEPLRKQLDPAVFGPMPVQPDTNP PGSLRANLLKARALLAEAGWTYRDGALRNAKGEPFRFEILDDSGGGMEPVVTAYQRNLAKLGIEARFRTADFALLQKRLD AFDYDMTTVRYPGVQVPGAEQATRFASRYADQPGSSNLIGLKSPAVDAILKALLQAQTREQLLDATHALDRVLMHGYYVV PQWYSTVHRVAYQHTLAYPATLPLYYSADDWVASMWWAKPDAAAHPAP
Sequences:
>Translated_608_residues MTAVLLALCGAAAPLSAHAAYAIAQYGEPKYPPGFRHFDYVNPDAPKGGTLVLANPNRLTTFDKFNPFTLRGNPAPGLGT IFESLTTGSADEPASAYGLLADDIAIAPDHLSVTFHLNPRARFSNGDPVTAADVKYSFDTLKSPQAAPQYAAYFSEIARV VVVDPATVRFEFTRTDRELPLIAGAVPVFSRKWGARPDGTRVPFDQLAFQPPIGSGPYLIDHYDSGRTITYRRDPHYWGA ALPVRVGTDNFDRIVYKLYGDSVARLEAFKAGEYDVLVEYIARNWVRRDVGKRFDDGELIKREFRQHNGAGMQGFLMNLR RPLFQDVRVREALDLAFDFEWLNRQLFYGGYTRLNSYFADTELQARGTPGAGELAILEPLRKQLDPAVFGPMPVQPDTNP PGSLRANLLKARALLAEAGWTYRDGALRNAKGEPFRFEILDDSGGGMEPVVTAYQRNLAKLGIEARFRTADFALLQKRLD AFDYDMTTVRYPGVQVPGAEQATRFASRYADQPGSSNLIGLKSPAVDAILKALLQAQTREQLLDATHALDRVLMHGYYVV PQWYSTVHRVAYQHTLAYPATLPLYYSADDWVASMWWAKPDAAAHPAP >Mature_607_residues TAVLLALCGAAAPLSAHAAYAIAQYGEPKYPPGFRHFDYVNPDAPKGGTLVLANPNRLTTFDKFNPFTLRGNPAPGLGTI FESLTTGSADEPASAYGLLADDIAIAPDHLSVTFHLNPRARFSNGDPVTAADVKYSFDTLKSPQAAPQYAAYFSEIARVV VVDPATVRFEFTRTDRELPLIAGAVPVFSRKWGARPDGTRVPFDQLAFQPPIGSGPYLIDHYDSGRTITYRRDPHYWGAA LPVRVGTDNFDRIVYKLYGDSVARLEAFKAGEYDVLVEYIARNWVRRDVGKRFDDGELIKREFRQHNGAGMQGFLMNLRR PLFQDVRVREALDLAFDFEWLNRQLFYGGYTRLNSYFADTELQARGTPGAGELAILEPLRKQLDPAVFGPMPVQPDTNPP GSLRANLLKARALLAEAGWTYRDGALRNAKGEPFRFEILDDSGGGMEPVVTAYQRNLAKLGIEARFRTADFALLQKRLDA FDYDMTTVRYPGVQVPGAEQATRFASRYADQPGSSNLIGLKSPAVDAILKALLQAQTREQLLDATHALDRVLMHGYYVVP QWYSTVHRVAYQHTLAYPATLPLYYSADDWVASMWWAKPDAAAHPAP
Specific function: Possible binding-protein with either a transport or enzymatic activity [H]
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=588, Percent_Identity=38.6054421768707, Blast_Score=386, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 67495; Mature: 67364
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: PS00210 HEMOCYANIN_2 ; PS01310 FXYD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVLLALCGAAAPLSAHAAYAIAQYGEPKYPPGFRHFDYVNPDAPKGGTLVLANPNRLT CHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC TFDKFNPFTLRGNPAPGLGTIFESLTTGSADEPASAYGLLADDIAIAPDHLSVTFHLNPR EECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHCEEHHCEEECCCCEEEEEEECCC ARFSNGDPVTAADVKYSFDTLKSPQAAPQYAAYFSEIARVVVVDPATVRFEFTRTDRELP CCCCCCCCCEEEEEEECHHHCCCCCCCHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCC LIAGAVPVFSRKWGARPDGTRVPFDQLAFQPPIGSGPYLIDHYDSGRTITYRRDPHYWGA EEECCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCC ALPVRVGTDNFDRIVYKLYGDSVARLEAFKAGEYDVLVEYIARNWVRRDVGKRFDDGELI EEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH KREFRQHNGAGMQGFLMNLRRPLFQDVRVREALDLAFDFEWLNRQLFYGGYTRLNSYFAD HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHCC TELQARGTPGAGELAILEPLRKQLDPAVFGPMPVQPDTNPPGSLRANLLKARALLAEAGW CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC TYRDGALRNAKGEPFRFEILDDSGGGMEPVVTAYQRNLAKLGIEARFRTADFALLQKRLD EECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHEECHHHHHHHHHHHH AFDYDMTTVRYPGVQVPGAEQATRFASRYADQPGSSNLIGLKSPAVDAILKALLQAQTRE HHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH QLLDATHALDRVLMHGYYVVPQWYSTVHRVAYQHTLAYPATLPLYYSADDWVASMWWAKP HHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCC DAAAHPAP CCCCCCCC >Mature Secondary Structure TAVLLALCGAAAPLSAHAAYAIAQYGEPKYPPGFRHFDYVNPDAPKGGTLVLANPNRLT HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC TFDKFNPFTLRGNPAPGLGTIFESLTTGSADEPASAYGLLADDIAIAPDHLSVTFHLNPR EECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHCEEHHCEEECCCCEEEEEEECCC ARFSNGDPVTAADVKYSFDTLKSPQAAPQYAAYFSEIARVVVVDPATVRFEFTRTDRELP CCCCCCCCCEEEEEEECHHHCCCCCCCHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCC LIAGAVPVFSRKWGARPDGTRVPFDQLAFQPPIGSGPYLIDHYDSGRTITYRRDPHYWGA EEECCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCC ALPVRVGTDNFDRIVYKLYGDSVARLEAFKAGEYDVLVEYIARNWVRRDVGKRFDDGELI EEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH KREFRQHNGAGMQGFLMNLRRPLFQDVRVREALDLAFDFEWLNRQLFYGGYTRLNSYFAD HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHCC TELQARGTPGAGELAILEPLRKQLDPAVFGPMPVQPDTNPPGSLRANLLKARALLAEAGW CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC TYRDGALRNAKGEPFRFEILDDSGGGMEPVVTAYQRNLAKLGIEARFRTADFALLQKRLD EECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHEECHHHHHHHHHHHH AFDYDMTTVRYPGVQVPGAEQATRFASRYADQPGSSNLIGLKSPAVDAILKALLQAQTRE HHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH QLLDATHALDRVLMHGYYVVPQWYSTVHRVAYQHTLAYPATLPLYYSADDWVASMWWAKP HHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCC DAAAHPAP CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]