| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238026841
Identifier: 238026841
GI number: 238026841
Start: 1316217
End: 1316495
Strand: Direct
Name: 238026841
Synonym: bglu_1g12040
Alternate gene names: NA
Gene position: 1316217-1316495 (Clockwise)
Preceding gene: 238026840
Following gene: 238026842
Centisome position: 33.69
GC content: 56.63
Gene sequence:
>279_bases ATGATTCCGATTTTTGTGGCGACGAATCTCGTCGTGCTGATGTTCTGCGCCTGGATCGCGCTGAGCGACGAGATCAACAC CGGCGTGTGGGGCACGCTCGGCTTCGCGATCGTGGGCATGTCCGCGATGGTCAACTTGATCAAACCCATCCGGAGCCCGG AACTGATCGATACGCCGGAGACGACGATGCTGATCGGCATGTCGATCGTGATCGTTTGGGCTTTGGCTCGGAAAGTGTAC TGGTGGAAGCGAGGAAAGAAGCATGAACACGTTCGATGA
Upstream 100 bases:
>100_bases TGTTCGGGCTGGCCATCGCCAAGGAACTGTTCAAGGAAATCAACAACGCCGATCTGATCGGGGCGTTCAAGCGGCGATTC TTCGGAAGGGAGGAGTGAGC
Downstream 100 bases:
>100_bases AGCAGCGCTGATTCGGGAGCTGACGCGGGACGAGGGGCGGCGGCTGAAGCCCTATGTCGACACGGTCGGCAAGATCACGA TCGGGGTGGGGCGGAACCTG
Product: putative holin protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 92; Mature: 92
Protein sequence:
>92_residues MIPIFVATNLVVLMFCAWIALSDEINTGVWGTLGFAIVGMSAMVNLIKPIRSPELIDTPETTMLIGMSIVIVWALARKVY WWKRGKKHEHVR
Sequences:
>Translated_92_residues MIPIFVATNLVVLMFCAWIALSDEINTGVWGTLGFAIVGMSAMVNLIKPIRSPELIDTPETTMLIGMSIVIVWALARKVY WWKRGKKHEHVR >Mature_92_residues MIPIFVATNLVVLMFCAWIALSDEINTGVWGTLGFAIVGMSAMVNLIKPIRSPELIDTPETTMLIGMSIVIVWALARKVY WWKRGKKHEHVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10398; Mature: 10398
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 6.5 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 6.5 %Met (Mature Protein) 7.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPIFVATNLVVLMFCAWIALSDEINTGVWGTLGFAIVGMSAMVNLIKPIRSPELIDTPE CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TTMLIGMSIVIVWALARKVYWWKRGKKHEHVR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MIPIFVATNLVVLMFCAWIALSDEINTGVWGTLGFAIVGMSAMVNLIKPIRSPELIDTPE CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TTMLIGMSIVIVWALARKVYWWKRGKKHEHVR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA