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The map label for this gene is ygeR [H]

Identifier: 238026831

GI number: 238026831

Start: 1307190

End: 1307891

Strand: Reverse

Name: ygeR [H]

Synonym: bglu_1g11910

Alternate gene names: 238026831

Gene position: 1307891-1307190 (Counterclockwise)

Preceding gene: 238026832

Following gene: 238026830

Centisome position: 33.48

GC content: 71.37

Gene sequence:

>702_bases
ATGTTGGTCAAGACCACCCGGCGGCTCGTCGTCGCTTCACTCGTCGCCGTGCTGGCCGCGTGCGGCTCCGCGCCGGTCGG
CCCCGGCTTCTATCGCGTCGAGCGCGGCGACACGCTGTCGAGGATCGCCCGCGCGAACCACCAATCGGTGTCGAACCTCG
CGCGCTGGAACTCGATCGCCAATCCCGACGCGATCGAGGTCGGCCAGGTGCTGCGCGTCGTGCCGCCGGGCGCCTCGGGC
AGTGCGCCGATCCGCACGACGGACGGCGCGCCCGCATCAAGCGCCCCGCCCTCGGCCGCCGCCACGGCGGCCACGCCGTC
GGTGCGGCCGGCCAGCTCGATTTCGCTGATCTGGCCGGCGGCGGGCACCGTCGTGCGCGGCTTCGACGGCGCCAATTCGA
AGGGCATCGACATCGCGAACACGGCCGGCACGCCGGTGGTTGCGGCGGCGGCTGGCACGGTGGTCTACGCGGGCAACGGG
CTGCGCGGCTACGGCAACCTGCTGATCATCAAGCATGACGCGGACTACCTGACGGCCTACGCGCACAATCGCGTGCTGCT
CGTGAAGGAAGGCCAGGCGGTGACGCAGGGCCAGAAGATCGCGGAAATGGGCGACACCGACAACGATCGCGTCGCGCTGC
ATTTCGAGCTGCGCTACGGCGGCCGGTCGATCGATCCGTCGCGCTACCTGCCCGCGCGCTGA

Upstream 100 bases:

>100_bases
AATACCGGGCACCGCGCCGAACCCGGTAAAATCCGTGGTTTTTGCCTTCGCTGCCGTCGACATCGCGGCGGCCCCCTGCG
AGGTTTCATTGCGAGGTTCC

Downstream 100 bases:

>100_bases
AACACGCCGGCGGCCACCAGGACGCTGCCGGCTCAACGCTGGCGATGCCGGCCGTCAACCCTGCCGCACACCGGATCGAT
GCGTGTCGCGAACCCGGCGA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MLVKTTRRLVVASLVAVLAACGSAPVGPGFYRVERGDTLSRIARANHQSVSNLARWNSIANPDAIEVGQVLRVVPPGASG
SAPIRTTDGAPASSAPPSAAATAATPSVRPASSISLIWPAAGTVVRGFDGANSKGIDIANTAGTPVVAAAAGTVVYAGNG
LRGYGNLLIIKHDADYLTAYAHNRVLLVKEGQAVTQGQKIAEMGDTDNDRVALHFELRYGGRSIDPSRYLPAR

Sequences:

>Translated_233_residues
MLVKTTRRLVVASLVAVLAACGSAPVGPGFYRVERGDTLSRIARANHQSVSNLARWNSIANPDAIEVGQVLRVVPPGASG
SAPIRTTDGAPASSAPPSAAATAATPSVRPASSISLIWPAAGTVVRGFDGANSKGIDIANTAGTPVVAAAAGTVVYAGNG
LRGYGNLLIIKHDADYLTAYAHNRVLLVKEGQAVTQGQKIAEMGDTDNDRVALHFELRYGGRSIDPSRYLPAR
>Mature_233_residues
MLVKTTRRLVVASLVAVLAACGSAPVGPGFYRVERGDTLSRIARANHQSVSNLARWNSIANPDAIEVGQVLRVVPPGASG
SAPIRTTDGAPASSAPPSAAATAATPSVRPASSISLIWPAAGTVVRGFDGANSKGIDIANTAGTPVVAAAAGTVVYAGNG
LRGYGNLLIIKHDADYLTAYAHNRVLLVKEGQAVTQGQKIAEMGDTDNDRVALHFELRYGGRSIDPSRYLPAR

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=234, Percent_Identity=46.5811965811966, Blast_Score=184, Evalue=5e-48,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=57.9831932773109, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 24048; Mature: 24048

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVKTTRRLVVASLVAVLAACGSAPVGPGFYRVERGDTLSRIARANHQSVSNLARWNSIA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHCHHHHHHHHHHCCCC
NPDAIEVGQVLRVVPPGASGSAPIRTTDGAPASSAPPSAAATAATPSVRPASSISLIWPA
CCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEECC
AGTVVRGFDGANSKGIDIANTAGTPVVAAAAGTVVYAGNGLRGYGNLLIIKHDADYLTAY
CCEEEECCCCCCCCCCEEECCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEE
AHNRVLLVKEGQAVTQGQKIAEMGDTDNDRVALHFELRYGGRSIDPSRYLPAR
CCCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLVKTTRRLVVASLVAVLAACGSAPVGPGFYRVERGDTLSRIARANHQSVSNLARWNSIA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHCHHHHHHHHHHCCCC
NPDAIEVGQVLRVVPPGASGSAPIRTTDGAPASSAPPSAAATAATPSVRPASSISLIWPA
CCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEECC
AGTVVRGFDGANSKGIDIANTAGTPVVAAAAGTVVYAGNGLRGYGNLLIIKHDADYLTAY
CCEEEECCCCCCCCCCEEECCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEE
AHNRVLLVKEGQAVTQGQKIAEMGDTDNDRVALHFELRYGGRSIDPSRYLPAR
CCCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]