| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is cfa [H]
Identifier: 238026727
GI number: 238026727
Start: 1187621
End: 1188817
Strand: Direct
Name: cfa [H]
Synonym: bglu_1g10840
Alternate gene names: 238026727
Gene position: 1187621-1188817 (Clockwise)
Preceding gene: 238026726
Following gene: 238026731
Centisome position: 30.4
GC content: 70.34
Gene sequence:
>1197_bases ATGACACCCGAATCCCGTTTTCCCGGCCGGCCCGACGGCAACCGGCCGAGCCGCGCCGGCGCGGCGCCCGCGATCCTCGA CGAACTGCTGCGGCGCGCCGGCGTGACGATCGGCGGGCCGCGCGCGTGGGACCTCCAGGTCCACGACGCGCGGGCCTACC GGCGCGTCCTCGCGAGCTGGTCGCTCGGGCTCGGCGAGGCCTACCTGGACGGACAGTGGGATTGCGACCGGCTCGACGTG CTGTTCGCGAAGCTGCTGCGTGCCGACCTCGACGGCGCGGCGACGGGCGTGGCGAGGCTGCGGCTCGCCGCCGGGCATCT GCGCCACCGCCTGTTCAACCTGCAATCGCAAGCGCGCGCGTTCCAGGTGGGCGAGCGGCACTACGACGCCGGCAACGACG TGTTCGAGGCGATGCTCGATTCGCGCATGATCTATTCGTGCGGCTACTGGGAACATGCCACCGACCTCGAGCAGGCGCAG ATCGACAAGCTCGACATGCTGTGTCGCAAGCTGCGGCTGCGGCCCGGCGAGACGCTGCTCGACATCGGCTGCGGCTGGGG CGGGCTCGCGAAGTTCACGGCCGAGCGCTACGGGGTGAAGGTGACCGGCGTGACCGTCTCCAGGCAGCAGCTCGCGCTCG CGCAGGCCCGCTGCCACGGGCTGCCCGTCAGGCTGCTGCTGCGCGACTACCGCGAGCTGCAGGGGCGCTTCGACAAGATC GTCTCGGTGGGCATGTTCGAGCACGTCGGGCAGAAGAACTACGCGACCTATTTCGACACCGTGCAGCGCCTGCTCGCACC CGAGGGCGTGTTCTTGCTGCACTCGATCGGTGTCGCCTCCGAGACGGCCGGCACCGACCCGTGGATCGACCGCTACGTGT TCCCGAACGGCAAGCTGCCGTCGGCGCGGCAGATCGCCGGGGCCGTGGAAGGGCGCTTCATCATCGAGGACTGGCACAAT TTCGGCCCCGACTACGACCGCACGCTGATGGCCTGGTGGGATCGCTTCGAGGCCGCGTGGCCGATGCTGCGCGCCCGCTA CGGGCAGCGCTTCTACCGCATGTGGAAATACTACCTGCTCTGCTGCGCGGGCTTCTTTCGCTCGCGGCAGGGCCAGCTCT GGCAACTGGTGCTGACCCATCCCGAGCGCGCGCAGACCTACCGCTCGGTGCGGCTGGGCGGCGGCGCGGGGCGCTGA
Upstream 100 bases:
>100_bases GATAGTGCGGGTCGGACACGAGCCCGCCAACGTGAGGCCGCTGCACCTGGCGGCGCACGCTTGGCGGCGAACCACGACGC GACCTGGAGCCGCCGCCGGC
Downstream 100 bases:
>100_bases GCGGCCCCGGGCGGGGCGCGGCCGCCTTGCCGCCGCGCTCTCATGGTCCGTCGCCGACCAGCCCGGTGCGCTCCTGGGCG CCCCAGCCCTGGTTGCCGCG
Product: cyclopropane fatty acyl phospholipid synthase
Products: NA
Alternate protein names: CFA synthase; Cyclopropane fatty acid synthase [H]
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MTPESRFPGRPDGNRPSRAGAAPAILDELLRRAGVTIGGPRAWDLQVHDARAYRRVLASWSLGLGEAYLDGQWDCDRLDV LFAKLLRADLDGAATGVARLRLAAGHLRHRLFNLQSQARAFQVGERHYDAGNDVFEAMLDSRMIYSCGYWEHATDLEQAQ IDKLDMLCRKLRLRPGETLLDIGCGWGGLAKFTAERYGVKVTGVTVSRQQLALAQARCHGLPVRLLLRDYRELQGRFDKI VSVGMFEHVGQKNYATYFDTVQRLLAPEGVFLLHSIGVASETAGTDPWIDRYVFPNGKLPSARQIAGAVEGRFIIEDWHN FGPDYDRTLMAWWDRFEAAWPMLRARYGQRFYRMWKYYLLCCAGFFRSRQGQLWQLVLTHPERAQTYRSVRLGGGAGR
Sequences:
>Translated_398_residues MTPESRFPGRPDGNRPSRAGAAPAILDELLRRAGVTIGGPRAWDLQVHDARAYRRVLASWSLGLGEAYLDGQWDCDRLDV LFAKLLRADLDGAATGVARLRLAAGHLRHRLFNLQSQARAFQVGERHYDAGNDVFEAMLDSRMIYSCGYWEHATDLEQAQ IDKLDMLCRKLRLRPGETLLDIGCGWGGLAKFTAERYGVKVTGVTVSRQQLALAQARCHGLPVRLLLRDYRELQGRFDKI VSVGMFEHVGQKNYATYFDTVQRLLAPEGVFLLHSIGVASETAGTDPWIDRYVFPNGKLPSARQIAGAVEGRFIIEDWHN FGPDYDRTLMAWWDRFEAAWPMLRARYGQRFYRMWKYYLLCCAGFFRSRQGQLWQLVLTHPERAQTYRSVRLGGGAGR >Mature_397_residues TPESRFPGRPDGNRPSRAGAAPAILDELLRRAGVTIGGPRAWDLQVHDARAYRRVLASWSLGLGEAYLDGQWDCDRLDVL FAKLLRADLDGAATGVARLRLAAGHLRHRLFNLQSQARAFQVGERHYDAGNDVFEAMLDSRMIYSCGYWEHATDLEQAQI DKLDMLCRKLRLRPGETLLDIGCGWGGLAKFTAERYGVKVTGVTVSRQQLALAQARCHGLPVRLLLRDYRELQGRFDKIV SVGMFEHVGQKNYATYFDTVQRLLAPEGVFLLHSIGVASETAGTDPWIDRYVFPNGKLPSARQIAGAVEGRFIIEDWHNF GPDYDRTLMAWWDRFEAAWPMLRARYGQRFYRMWKYYLLCCAGFFRSRQGQLWQLVLTHPERAQTYRSVRLGGGAGR
Specific function: Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge [H]
COG id: COG2230
COG function: function code M; Cyclopropane fatty acid synthase and related methyltransferases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CFA/CMAS family [H]
Homologues:
Organism=Escherichia coli, GI1787951, Length=357, Percent_Identity=56.3025210084034, Blast_Score=416, Evalue=1e-117, Organism=Caenorhabditis elegans, GI133904226, Length=363, Percent_Identity=28.3746556473829, Blast_Score=147, Evalue=7e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003333 [H]
Pfam domain/function: PF02353 CMAS [H]
EC number: =2.1.1.79 [H]
Molecular weight: Translated: 45201; Mature: 45070
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPESRFPGRPDGNRPSRAGAAPAILDELLRRAGVTIGGPRAWDLQVHDARAYRRVLASW CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCEEEEEEEHHHHHHHHHHHHH SLGLGEAYLDGQWDCDRLDVLFAKLLRADLDGAATGVARLRLAAGHLRHRLFNLQSQARA CCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FQVGERHYDAGNDVFEAMLDSRMIYSCGYWEHATDLEQAQIDKLDMLCRKLRLRPGETLL HHHHHHHCCCCHHHHHHHHCCCCEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCEEE DIGCGWGGLAKFTAERYGVKVTGVTVSRQQLALAQARCHGLPVRLLLRDYRELQGRFDKI EECCCCCHHHHHHHHHCCEEEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH VSVGMFEHVGQKNYATYFDTVQRLLAPEGVFLLHSIGVASETAGTDPWIDRYVFPNGKLP HHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCHHHCEECCCCCCC SARQIAGAVEGRFIIEDWHNFGPDYDRTLMAWWDRFEAAWPMLRARYGQRFYRMWKYYLL CHHHHHHHHCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CCAGFFRSRQGQLWQLVLTHPERAQTYRSVRLGGGAGR HHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCC >Mature Secondary Structure TPESRFPGRPDGNRPSRAGAAPAILDELLRRAGVTIGGPRAWDLQVHDARAYRRVLASW CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCEEEEEEEHHHHHHHHHHHHH SLGLGEAYLDGQWDCDRLDVLFAKLLRADLDGAATGVARLRLAAGHLRHRLFNLQSQARA CCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FQVGERHYDAGNDVFEAMLDSRMIYSCGYWEHATDLEQAQIDKLDMLCRKLRLRPGETLL HHHHHHHCCCCHHHHHHHHCCCCEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCEEE DIGCGWGGLAKFTAERYGVKVTGVTVSRQQLALAQARCHGLPVRLLLRDYRELQGRFDKI EECCCCCHHHHHHHHHCCEEEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH VSVGMFEHVGQKNYATYFDTVQRLLAPEGVFLLHSIGVASETAGTDPWIDRYVFPNGKLP HHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCHHHCEECCCCCCC SARQIAGAVEGRFIIEDWHNFGPDYDRTLMAWWDRFEAAWPMLRARYGQRFYRMWKYYLL CHHHHHHHHCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CCAGFFRSRQGQLWQLVLTHPERAQTYRSVRLGGGAGR HHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]