| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238026652
Identifier: 238026652
GI number: 238026652
Start: 1083815
End: 1084426
Strand: Direct
Name: 238026652
Synonym: bglu_1g10040
Alternate gene names: NA
Gene position: 1083815-1084426 (Clockwise)
Preceding gene: 238026651
Following gene: 238026653
Centisome position: 27.74
GC content: 70.42
Gene sequence:
>612_bases GTGTCCGTTCTGCGCGCCCGACGGCGCACCCCCCGATCGATGATGGAGTTCGTTATCCGGCCGGCGCGGCCGTGGCTGGT GGCCACGGCGGTCGCCGCGGCCTGTCTGCTCGGCGGCTGCGACAGCCGCCAATCCGAGGACGTCGTGCATCGGCTCAAGG AATTGTTTCGCGCGATCCAGCCCACGCCGCTGCTGCTCAAGGAGCTGAAACCGGGCGTGTCGACCGAGGCCGAGGTGCGC TCGCGGCTCGGCGCGCCCGAGACCGAACGGCAGGCGATCGACGGCTCGCGGCGCCTCGAGTATCCGCGCGGCCCGATGGG CGACGAGACCTACATGGTCGACATCGACCGCAACGGGCTCTATCTCGGCGCGACCCAGGTGCTGACGGCCGAGACCTTCG CGATGATCCGGCCCGGCATGACGCAGGACGAGGTGCGCCAACTGCTCGGCAAGCCGACCGAGGTGGCGCGCTATCCGCTC AAGCAGGAGACGGTCTGGAGCTGGCGCTGGCGCGAGAACGGCGTCAACCAGGACGCGTTCTTCAACATCCACTTCGGGCC GGACGGGCTGGTGGCGACCACCTCGCGGTCGGACGCGGAGGCGGGGCGGTAG
Upstream 100 bases:
>100_bases CCCGGGCGCCGTGGTCCGCCTCGCCGCGCGCCGGTTGGGCCGGTTGCGCCCTCGAGCGGGTCGATTTGTCGGGCGACCGG GTGCGCGGGATGCTTGGGCG
Downstream 100 bases:
>100_bases GGCGCGTCGCCCGCACGGTGCGGGCGGCCATGCGCCGCGTGCCTGCCTGACCGCTCGGCCAGGCCGCCCGGCATCGGCGC GGCCGGGCCCACCGGCCGCC
Product: putative lipoprotein
Products: NA
Alternate protein names: Transmembrane Protein
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MSVLRARRRTPRSMMEFVIRPARPWLVATAVAAACLLGGCDSRQSEDVVHRLKELFRAIQPTPLLLKELKPGVSTEAEVR SRLGAPETERQAIDGSRRLEYPRGPMGDETYMVDIDRNGLYLGATQVLTAETFAMIRPGMTQDEVRQLLGKPTEVARYPL KQETVWSWRWRENGVNQDAFFNIHFGPDGLVATTSRSDAEAGR
Sequences:
>Translated_203_residues MSVLRARRRTPRSMMEFVIRPARPWLVATAVAAACLLGGCDSRQSEDVVHRLKELFRAIQPTPLLLKELKPGVSTEAEVR SRLGAPETERQAIDGSRRLEYPRGPMGDETYMVDIDRNGLYLGATQVLTAETFAMIRPGMTQDEVRQLLGKPTEVARYPL KQETVWSWRWRENGVNQDAFFNIHFGPDGLVATTSRSDAEAGR >Mature_202_residues SVLRARRRTPRSMMEFVIRPARPWLVATAVAAACLLGGCDSRQSEDVVHRLKELFRAIQPTPLLLKELKPGVSTEAEVRS RLGAPETERQAIDGSRRLEYPRGPMGDETYMVDIDRNGLYLGATQVLTAETFAMIRPGMTQDEVRQLLGKPTEVARYPLK QETVWSWRWRENGVNQDAFFNIHFGPDGLVATTSRSDAEAGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22856; Mature: 22725
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVLRARRRTPRSMMEFVIRPARPWLVATAVAAACLLGGCDSRQSEDVVHRLKELFRAIQ CCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC PTPLLLKELKPGVSTEAEVRSRLGAPETERQAIDGSRRLEYPRGPMGDETYMVDIDRNGL CCHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCE YLGATQVLTAETFAMIRPGMTQDEVRQLLGKPTEVARYPLKQETVWSWRWRENGVNQDAF EECHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHCCCCCCCEEEEEHHCCCCCCCEE FNIHFGPDGLVATTSRSDAEAGR EEEEECCCCEEEECCCCCCCCCC >Mature Secondary Structure SVLRARRRTPRSMMEFVIRPARPWLVATAVAAACLLGGCDSRQSEDVVHRLKELFRAIQ CCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC PTPLLLKELKPGVSTEAEVRSRLGAPETERQAIDGSRRLEYPRGPMGDETYMVDIDRNGL CCHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCE YLGATQVLTAETFAMIRPGMTQDEVRQLLGKPTEVARYPLKQETVWSWRWRENGVNQDAF EECHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHCCCCCCCEEEEEHHCCCCCCCEE FNIHFGPDGLVATTSRSDAEAGR EEEEECCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA