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The map label for this gene is yfdE [H]

Identifier: 238025475

GI number: 238025475

Start: 2689666

End: 2690718

Strand: Reverse

Name: yfdE [H]

Synonym: bglu_2g21670

Alternate gene names: 238025475

Gene position: 2690718-2689666 (Counterclockwise)

Preceding gene: 238025476

Following gene: 238025472

Centisome position: 95.17

GC content: 76.07

Gene sequence:

>1053_bases
ATGAACGTGGCGATGCCGCTGGCGGGCGTCGAAGTGCTCGAACTCGAAGGGCTCGGCCCCGCGCCGCTGGCCGGCTGGAT
GCTGGCGGCGCTGGGGGCGCGCGTGACGCTGGTGGCGCGCCCGGGCGGCCCGCCCGGCCTGCAGGCGCGCGACGGCGACC
TGCTGCGCGAGGGCAAGACCGTGGTCGAATGCGACCTGAAGGCGGCCGGCGCGCGCGAGGCGATGCTCGACCGGATCGCG
CGCGCCGACGTGCTGATCGAGGGCTACCGGCCCGGCGTGATGGAGCGGCTCGGCCTCGGGCCGCACGCCTGCGCCGCGCG
CCGGCCGTCGCTCGTCTATGCGCGCATGACGGGCTGGGGCCAGCACGGGCCGCTCGCCGGGCGCGCCGGCCACGATCTCA
ACTACGTCGCGCTGACCGGGCTGCTCGCGCTGGCCGTCAAGCCGGGCCAGATGCCGGTGATCCCGCCCACCGTGGTCGGC
GACGCGGGCGGCGCGCTCGGCCTGGCGTTCGGCATCGTCAGCGCGCTGCTGGCCGCGCGCGCCAGCGGGCGCGGCCGCGT
GGTGGACGGTGCGATCGTCGATGTGGTCGCGATGCTCGGCGCGCTCGCGCTGTGGGCGCGCGAGCACGGGCAGCTCGGCG
GGCCGGATGGCGCGAGCCTGTTCCACGACGCGCCGTTCTATGCCGTCTACCGCTGCGCGGACGGCGCGTGGATCAGCGTG
GCCGCGCTGGAGCCGGCGTTCTACCGCCGCTTCGTGGCGGGCTTCGGGCTCGACGGCATCGATCCCGAGGCGCAGTACGC
TCGCGAGACCTGGCCCGCGCTGAAGACGCGCTTCGCCGCGCATTTCGCGAGCGCGCCGGCGGCGTTCTGGTGCGAGCGCT
TCGCGGATGCCGACGCGTGCGTGGCGCCGGTGCTCGATTTCGAGGCGGCCGCGCGGCACCCGCACAACCGCGCGCGCGGC
GTGCATGCTTTGACCCCGGACGGGGCGCTGCGGGTCAAGGTGGCGCCGCGCTTCACCTGGCTCGATGACGAGCCGGCCGC
CTGCGGCGAATGA

Upstream 100 bases:

>100_bases
GCGTTCTGAGGCTCGCGGCAGCCCGCGCGGCGTGGGTGCGTGCGGGCGCTGACGTGACAGCGGGCGCGGCCGCGACGCGG
CGCGCCGAACGGAGGCCGGA

Downstream 100 bases:

>100_bases
GGCAGACCTGAGGCAGACCTGGGGGAGACCTGGGGGAGACCTGAGGCAGGCGCGCGGGCGCTGCCGGGCGGTCGCGCGGC
GCGCGTGGGGGGCGGTGGCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MNVAMPLAGVEVLELEGLGPAPLAGWMLAALGARVTLVARPGGPPGLQARDGDLLREGKTVVECDLKAAGAREAMLDRIA
RADVLIEGYRPGVMERLGLGPHACAARRPSLVYARMTGWGQHGPLAGRAGHDLNYVALTGLLALAVKPGQMPVIPPTVVG
DAGGALGLAFGIVSALLAARASGRGRVVDGAIVDVVAMLGALALWAREHGQLGGPDGASLFHDAPFYAVYRCADGAWISV
AALEPAFYRRFVAGFGLDGIDPEAQYARETWPALKTRFAAHFASAPAAFWCERFADADACVAPVLDFEAAARHPHNRARG
VHALTPDGALRVKVAPRFTWLDDEPAACGE

Sequences:

>Translated_350_residues
MNVAMPLAGVEVLELEGLGPAPLAGWMLAALGARVTLVARPGGPPGLQARDGDLLREGKTVVECDLKAAGAREAMLDRIA
RADVLIEGYRPGVMERLGLGPHACAARRPSLVYARMTGWGQHGPLAGRAGHDLNYVALTGLLALAVKPGQMPVIPPTVVG
DAGGALGLAFGIVSALLAARASGRGRVVDGAIVDVVAMLGALALWAREHGQLGGPDGASLFHDAPFYAVYRCADGAWISV
AALEPAFYRRFVAGFGLDGIDPEAQYARETWPALKTRFAAHFASAPAAFWCERFADADACVAPVLDFEAAARHPHNRARG
VHALTPDGALRVKVAPRFTWLDDEPAACGE
>Mature_350_residues
MNVAMPLAGVEVLELEGLGPAPLAGWMLAALGARVTLVARPGGPPGLQARDGDLLREGKTVVECDLKAAGAREAMLDRIA
RADVLIEGYRPGVMERLGLGPHACAARRPSLVYARMTGWGQHGPLAGRAGHDLNYVALTGLLALAVKPGQMPVIPPTVVG
DAGGALGLAFGIVSALLAARASGRGRVVDGAIVDVVAMLGALALWAREHGQLGGPDGASLFHDAPFYAVYRCADGAWISV
AALEPAFYRRFVAGFGLDGIDPEAQYARETWPALKTRFAAHFASAPAAFWCERFADADACVAPVLDFEAAARHPHNRARG
VHALTPDGALRVKVAPRFTWLDDEPAACGE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=335, Percent_Identity=39.1044776119403, Blast_Score=232, Evalue=5e-61,
Organism=Homo sapiens, GI266456254, Length=335, Percent_Identity=39.1044776119403, Blast_Score=231, Evalue=5e-61,
Organism=Homo sapiens, GI266458393, Length=287, Percent_Identity=39.0243902439024, Blast_Score=172, Evalue=4e-43,
Organism=Homo sapiens, GI266458397, Length=253, Percent_Identity=39.9209486166008, Blast_Score=168, Evalue=8e-42,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=43.3823529411765, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI42822893, Length=136, Percent_Identity=43.3823529411765, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI300863124, Length=348, Percent_Identity=25.2873563218391, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI300863128, Length=339, Percent_Identity=25.0737463126844, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI300863126, Length=155, Percent_Identity=32.258064516129, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI87082093, Length=337, Percent_Identity=27.299703264095, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788717, Length=212, Percent_Identity=25.9433962264151, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=316, Percent_Identity=32.9113924050633, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI32564160, Length=344, Percent_Identity=31.3953488372093, Blast_Score=167, Evalue=1e-41,
Organism=Drosophila melanogaster, GI24585488, Length=335, Percent_Identity=39.4029850746269, Blast_Score=220, Evalue=1e-57,
Organism=Drosophila melanogaster, GI24648431, Length=197, Percent_Identity=30.9644670050761, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 36597; Mature: 36597

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVAMPLAGVEVLELEGLGPAPLAGWMLAALGARVTLVARPGGPPGLQARDGDLLREGKT
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHCCCE
VVECDLKAAGAREAMLDRIARADVLIEGYRPGVMERLGLGPHACAARRPSLVYARMTGWG
EEEECCCCCCHHHHHHHHHHHHHHEEECCCCCHHHHHCCCCHHHHCCCCCEEEEEECCCC
QHGPLAGRAGHDLNYVALTGLLALAVKPGQMPVIPPTVVGDAGGALGLAFGIVSALLAAR
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH
ASGRGRVVDGAIVDVVAMLGALALWAREHGQLGGPDGASLFHDAPFYAVYRCADGAWISV
CCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEEECCCCEEEE
AALEPAFYRRFVAGFGLDGIDPEAQYARETWPALKTRFAAHFASAPAAFWCERFADADAC
EECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
VAPVLDFEAAARHPHNRARGVHALTPDGALRVKVAPRFTWLDDEPAACGE
HHHHHHHHHHHCCCCHHHCCCEEECCCCEEEEEECCCEEECCCCCCCCCC
>Mature Secondary Structure
MNVAMPLAGVEVLELEGLGPAPLAGWMLAALGARVTLVARPGGPPGLQARDGDLLREGKT
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHCCCE
VVECDLKAAGAREAMLDRIARADVLIEGYRPGVMERLGLGPHACAARRPSLVYARMTGWG
EEEECCCCCCHHHHHHHHHHHHHHEEECCCCCHHHHHCCCCHHHHCCCCCEEEEEECCCC
QHGPLAGRAGHDLNYVALTGLLALAVKPGQMPVIPPTVVGDAGGALGLAFGIVSALLAAR
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH
ASGRGRVVDGAIVDVVAMLGALALWAREHGQLGGPDGASLFHDAPFYAVYRCADGAWISV
CCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEEECCCCEEEE
AALEPAFYRRFVAGFGLDGIDPEAQYARETWPALKTRFAAHFASAPAAFWCERFADADAC
EECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
VAPVLDFEAAARHPHNRARGVHALTPDGALRVKVAPRFTWLDDEPAACGE
HHHHHHHHHHHCCCCHHHCCCEEECCCCEEEEEECCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]