Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
---|---|
Accession | NC_012721 |
Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is 238025424
Identifier: 238025424
GI number: 238025424
Start: 2615167
End: 2617701
Strand: Reverse
Name: 238025424
Synonym: bglu_2g21130
Alternate gene names: NA
Gene position: 2617701-2615167 (Counterclockwise)
Preceding gene: 238025425
Following gene: 238025423
Centisome position: 92.59
GC content: 64.89
Gene sequence:
>2535_bases ATGGCTTCCGAATCGCTGAGCAGAACATTACGAGGTGGTTATGCGCAGTTCGAGCGCGTGGTCAAACTCGACACGCCCGC AGGCCCCGACCGGTTGGTGCCGCTCTGGGTCAAGGGCACTGCCCGCCTGGGCCGGGACTACGAATTCGTCGTCGAGGCCG CCGCGCTGCTCGACGGCGGCGACATCGATGCACGGGCCATACTCGGCTCAGCGGTCACCTTGTGGATCAGGCAAACCGAC CGCTCCTACATGCCCATTCACGGCTACGTTCATCACTTCGCCGAATTGGGCGCGGACGGCTCGTGCGCCTACTATCAACT CCGATTCTCGTCGTGGCTCTACTTCCTGCGCTTGCGCCGCGATCAGCGTGACTGGCAAGAAACGACCGGCGAACAAATTC TGATCGACGTTTTTCGAGCCCACCCTCAGGCAACCACACATAACGCCTACCGTTTCGATCTGAACGAGCCGATGCCGGCA TATTCCTACCGCATGCAGTGGGAAACCGATCTGAATTTCGTGTACCGGAGCATGGAGGAAGCCGGCGTGTTCGGGCGCTT CGAATTTGCCGAAGACGGCCGCTCGCATACGTTCGTCGTGACGGACAGCGTCTCTCAGGTGCCGGTGCTCAAGCAGAGTG TCGTGCAGCTCAGCCACGCGGGCGATAACGAGGAGTTCGACGGCTTCGTCTCGTTTCGCGAGCGGATGCAGTTGCAAAGC GCGCGACTTACCGCCAACACCTTCGACTACAAGCAACCCAGCGCCGACAAGCGCATCGAATGCGCCACCGCATCGCCGGA CGGGCTGCCGGTTGACGGCGAAGTGTACGACTACACCGGCGCCTATACCTGGGGGGCAGACAGCGACGGTGAGCGTTACG TGCGCAACCGTATCGAGGCGTGGGAATCGCAGATCCAGCGATTCGACGCGGTGGGCGGCTTGCGGGCTGCGATGCCCGGC TATCGGTTCACGCTTTCGCGAGGCGCGGCGCTCGACAGCGGCCAGTCAGGCGACAACGAATACGTCATTCTCGGTGTGGA CTGGATGATCCGCAACAACGTGCCGGGCCTGGACGCCTATCCGTCGCTCGAGGACAGCCTGCGCGACGAGCTCGCGGCAC GGGCCGCCGGCCGGGCAGGCTCGGCGGGCGGGGACGTGGACGGCAGCCAGGGCTTCTTTCAGGTCAAGGTGGAATTGCAG CGGCGCAGCACGCCATTCCGCCTGCCTCGGGAGCATCGCAAGCCCACCATGTCGCTGATGAACGCCGTCGTCACCGCACC CAACGGCGAAGAAGTGCTCACCGACCGCCTGAACCGCGCGAGGCTGCACTTCCCCTGGTATCGCGACGCGCAGGCCTGTT GCTGGGTACGTACGGCGTTTGCCGATGCGGGCTCCCAGCGCGGCGCGGTTCATCCGCTGCGCGATGGCGATGAAGTTCTC GTGGACTTCGTCGGCGGCGATTGCGACCGCCCCGTGGTGGTTTCGCGTGTCTTCGGCGGCGACACGCAACCGGTGTGGCA CAGCGATGGACTGCTCTCCGGCTATCGGTCGAAGGAATATAGCGGCAGCGGCTACAACCAGCTGGCGCTGGATGATTCGA CCGGGCAAAACCGCGTCCAACTTTACTCGAGCAGCTATCAGACTCACTTGCATCTCGGCTATCTCATCCAGCACGAGAAC AATAGCCGCGGAGCCTTCCTGGGCCGGGGCTTCGACCTCAAATCCGACGCCTACGGCGCCTTGCGGGCCGGTCAGGGATT ATTCGTGTCGACGCATCCGACCACAACGGCGCAGCCGCTCGACGTGGCCCCGGCGGCCGATCAGCTCGCCGGCGCACGTC AGGTTGCCGACCTGGCCTCGCAGGCCAGCGCGGCGAATCGTGCGGAAGGCCTTGACGACGGGTTGCACGCACTCGATCGG TTTACGCAGGCGACCCACTACAGCAACGCCGGCAGTGTGGCTGGAGGGCGTACCGCGGGCGGCGGGCAGGGAAGCGCCAA CGGCTTCGCCATGCCGGTCATGCTGCTGGCCAGCCCCGCCGGCATGGGGCTGTCCACGCAGGACTCGCTTCAGGCCACCG CCAGTCAGCACGTCAACGTGGTCAGCGGCCAGAGCACGCACGTCGCGGCGGGCAAATCGTTTCTCGTGAGCGCGATGGAA AAGCTCAGCCTGTTCGTGCAGAACGCCGGCATGAAGCTTTTTGCGGCCAAGGGCAAGGTCGAGATTCAGGCGCAAAGCGA CGCGATGGCGCTCTCGGCGCTCAAGGATCTGACGATCACGAGCGCCAGCGGGCGGCTCGTGCTGTCGGCCGACAAGGAAA TCTGGATCGGCGCCGGCGGCTCGTATATCAAGATCACGCCGGACCTGATCGAGAACGGCACCACGGGCCAGATCCTCGAA AAATGCGCGAGCTGGGACAAGCCCGGCGCCGCCTCGATGCGCCTGCCCGCCGAACTCCCGAGCGCGGCAAAGAGCTGCGC ATGGAGGATGGGCGGCGCCGCGGCCGACAGCGCCTCGAGCGTAGAGCTGGGATGA
Upstream 100 bases:
>100_bases GGCGATCCAGCCCGATTGACTGTCGGATGGCATTGCTAGAAGCCCTCCGCCATCTCTAAAATCCGAACCGGTCGAAAACA TAAAACTTCCGGTACGGCGC
Downstream 100 bases:
>100_bases CCATGAGCGACCTGAATATGCCCACGCTGGGCAACACCGATCCCACCAGTCCCCCAGCCGTCGAAGCTGTCGTCGTCGCC TTGCGCAAATATTTCAGCCG
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; Rhs-Family Protein; Rhs Element Vgr Family; VGR-Like Protein; VgrG Protein; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Element Vgr Related Protein; Replication/Virulence Associated Protein; Conserved Hypothethical Protein; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; Rhs Element Vgr-Related Protein
Number of amino acids: Translated: 844; Mature: 843
Protein sequence:
>844_residues MASESLSRTLRGGYAQFERVVKLDTPAGPDRLVPLWVKGTARLGRDYEFVVEAAALLDGGDIDARAILGSAVTLWIRQTD RSYMPIHGYVHHFAELGADGSCAYYQLRFSSWLYFLRLRRDQRDWQETTGEQILIDVFRAHPQATTHNAYRFDLNEPMPA YSYRMQWETDLNFVYRSMEEAGVFGRFEFAEDGRSHTFVVTDSVSQVPVLKQSVVQLSHAGDNEEFDGFVSFRERMQLQS ARLTANTFDYKQPSADKRIECATASPDGLPVDGEVYDYTGAYTWGADSDGERYVRNRIEAWESQIQRFDAVGGLRAAMPG YRFTLSRGAALDSGQSGDNEYVILGVDWMIRNNVPGLDAYPSLEDSLRDELAARAAGRAGSAGGDVDGSQGFFQVKVELQ RRSTPFRLPREHRKPTMSLMNAVVTAPNGEEVLTDRLNRARLHFPWYRDAQACCWVRTAFADAGSQRGAVHPLRDGDEVL VDFVGGDCDRPVVVSRVFGGDTQPVWHSDGLLSGYRSKEYSGSGYNQLALDDSTGQNRVQLYSSSYQTHLHLGYLIQHEN NSRGAFLGRGFDLKSDAYGALRAGQGLFVSTHPTTTAQPLDVAPAADQLAGARQVADLASQASAANRAEGLDDGLHALDR FTQATHYSNAGSVAGGRTAGGGQGSANGFAMPVMLLASPAGMGLSTQDSLQATASQHVNVVSGQSTHVAAGKSFLVSAME KLSLFVQNAGMKLFAAKGKVEIQAQSDAMALSALKDLTITSASGRLVLSADKEIWIGAGGSYIKITPDLIENGTTGQILE KCASWDKPGAASMRLPAELPSAAKSCAWRMGGAAADSASSVELG
Sequences:
>Translated_844_residues MASESLSRTLRGGYAQFERVVKLDTPAGPDRLVPLWVKGTARLGRDYEFVVEAAALLDGGDIDARAILGSAVTLWIRQTD RSYMPIHGYVHHFAELGADGSCAYYQLRFSSWLYFLRLRRDQRDWQETTGEQILIDVFRAHPQATTHNAYRFDLNEPMPA YSYRMQWETDLNFVYRSMEEAGVFGRFEFAEDGRSHTFVVTDSVSQVPVLKQSVVQLSHAGDNEEFDGFVSFRERMQLQS ARLTANTFDYKQPSADKRIECATASPDGLPVDGEVYDYTGAYTWGADSDGERYVRNRIEAWESQIQRFDAVGGLRAAMPG YRFTLSRGAALDSGQSGDNEYVILGVDWMIRNNVPGLDAYPSLEDSLRDELAARAAGRAGSAGGDVDGSQGFFQVKVELQ RRSTPFRLPREHRKPTMSLMNAVVTAPNGEEVLTDRLNRARLHFPWYRDAQACCWVRTAFADAGSQRGAVHPLRDGDEVL VDFVGGDCDRPVVVSRVFGGDTQPVWHSDGLLSGYRSKEYSGSGYNQLALDDSTGQNRVQLYSSSYQTHLHLGYLIQHEN NSRGAFLGRGFDLKSDAYGALRAGQGLFVSTHPTTTAQPLDVAPAADQLAGARQVADLASQASAANRAEGLDDGLHALDR FTQATHYSNAGSVAGGRTAGGGQGSANGFAMPVMLLASPAGMGLSTQDSLQATASQHVNVVSGQSTHVAAGKSFLVSAME KLSLFVQNAGMKLFAAKGKVEIQAQSDAMALSALKDLTITSASGRLVLSADKEIWIGAGGSYIKITPDLIENGTTGQILE KCASWDKPGAASMRLPAELPSAAKSCAWRMGGAAADSASSVELG >Mature_843_residues ASESLSRTLRGGYAQFERVVKLDTPAGPDRLVPLWVKGTARLGRDYEFVVEAAALLDGGDIDARAILGSAVTLWIRQTDR SYMPIHGYVHHFAELGADGSCAYYQLRFSSWLYFLRLRRDQRDWQETTGEQILIDVFRAHPQATTHNAYRFDLNEPMPAY SYRMQWETDLNFVYRSMEEAGVFGRFEFAEDGRSHTFVVTDSVSQVPVLKQSVVQLSHAGDNEEFDGFVSFRERMQLQSA RLTANTFDYKQPSADKRIECATASPDGLPVDGEVYDYTGAYTWGADSDGERYVRNRIEAWESQIQRFDAVGGLRAAMPGY RFTLSRGAALDSGQSGDNEYVILGVDWMIRNNVPGLDAYPSLEDSLRDELAARAAGRAGSAGGDVDGSQGFFQVKVELQR RSTPFRLPREHRKPTMSLMNAVVTAPNGEEVLTDRLNRARLHFPWYRDAQACCWVRTAFADAGSQRGAVHPLRDGDEVLV DFVGGDCDRPVVVSRVFGGDTQPVWHSDGLLSGYRSKEYSGSGYNQLALDDSTGQNRVQLYSSSYQTHLHLGYLIQHENN SRGAFLGRGFDLKSDAYGALRAGQGLFVSTHPTTTAQPLDVAPAADQLAGARQVADLASQASAANRAEGLDDGLHALDRF TQATHYSNAGSVAGGRTAGGGQGSANGFAMPVMLLASPAGMGLSTQDSLQATASQHVNVVSGQSTHVAAGKSFLVSAMEK LSLFVQNAGMKLFAAKGKVEIQAQSDAMALSALKDLTITSASGRLVLSADKEIWIGAGGSYIKITPDLIENGTTGQILEK CASWDKPGAASMRLPAELPSAAKSCAWRMGGAAADSASSVELG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91609; Mature: 91478
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASESLSRTLRGGYAQFERVVKLDTPAGPDRLVPLWVKGTARLGRDYEFVVEAAALLDGG CCCHHHHHHHHCCHHHHHHEEEECCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHCCC DIDARAILGSAVTLWIRQTDRSYMPIHGYVHHFAELGADGSCAYYQLRFSSWLYFLRLRR CCCHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHH DQRDWQETTGEQILIDVFRAHPQATTHNAYRFDLNEPMPAYSYRMQWETDLNFVYRSMEE HHHHHHHCCCCCEEHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHH AGVFGRFEFAEDGRSHTFVVTDSVSQVPVLKQSVVQLSHAGDNEEFDGFVSFRERMQLQS CCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH ARLTANTFDYKQPSADKRIECATASPDGLPVDGEVYDYTGAYTWGADSDGERYVRNRIEA HHEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCEEECCCCCCHHHHHHHHHHH WESQIQRFDAVGGLRAAMPGYRFTLSRGAALDSGQSGDNEYVILGVDWMIRNNVPGLDAY HHHHHHHHHHHCCHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCC PSLEDSLRDELAARAAGRAGSAGGDVDGSQGFFQVKVELQRRSTPFRLPREHRKPTMSLM CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHCCHHHHHH NAVVTAPNGEEVLTDRLNRARLHFPWYRDAQACCWVRTAFADAGSQRGAVHPLRDGDEVL HHHEECCCCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE VDFVGGDCDRPVVVSRVFGGDTQPVWHSDGLLSGYRSKEYSGSGYNQLALDDSTGQNRVQ EEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEE LYSSSYQTHLHLGYLIQHENNSRGAFLGRGFDLKSDAYGALRAGQGLFVSTHPTTTAQPL EEECCCCEEEEEEEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCEEEEECCCCCCCCCC DVAPAADQLAGARQVADLASQASAANRAEGLDDGLHALDRFTQATHYSNAGSVAGGRTAG CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GGQGSANGFAMPVMLLASPAGMGLSTQDSLQATASQHVNVVSGQSTHVAAGKSFLVSAME CCCCCCCCCHHHHHEEECCCCCCCCCHHHHHHHHHHCEEEECCCCCEECCCHHHHHHHHH KLSLFVQNAGMKLFAAKGKVEIQAQSDAMALSALKDLTITSASGRLVLSADKEIWIGAGG HHHHHHHCCCCEEEEECCEEEEEECCCHHHHHHHHHCEEECCCCEEEEECCCEEEEECCC SYIKITPDLIENGTTGQILEKCASWDKPGAASMRLPAELPSAAKSCAWRMGGAAADSASS CEEEEEHHHHCCCCHHHHHHHHHCCCCCCCCCEECCHHCHHHHHHHHHHCCCCCCCCCCC VELG CCCC >Mature Secondary Structure ASESLSRTLRGGYAQFERVVKLDTPAGPDRLVPLWVKGTARLGRDYEFVVEAAALLDGG CCHHHHHHHHCCHHHHHHEEEECCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHCCC DIDARAILGSAVTLWIRQTDRSYMPIHGYVHHFAELGADGSCAYYQLRFSSWLYFLRLRR CCCHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHH DQRDWQETTGEQILIDVFRAHPQATTHNAYRFDLNEPMPAYSYRMQWETDLNFVYRSMEE HHHHHHHCCCCCEEHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHH AGVFGRFEFAEDGRSHTFVVTDSVSQVPVLKQSVVQLSHAGDNEEFDGFVSFRERMQLQS CCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH ARLTANTFDYKQPSADKRIECATASPDGLPVDGEVYDYTGAYTWGADSDGERYVRNRIEA HHEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCEEECCCCCCHHHHHHHHHHH WESQIQRFDAVGGLRAAMPGYRFTLSRGAALDSGQSGDNEYVILGVDWMIRNNVPGLDAY HHHHHHHHHHHCCHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCC PSLEDSLRDELAARAAGRAGSAGGDVDGSQGFFQVKVELQRRSTPFRLPREHRKPTMSLM CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHCCHHHHHH NAVVTAPNGEEVLTDRLNRARLHFPWYRDAQACCWVRTAFADAGSQRGAVHPLRDGDEVL HHHEECCCCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE VDFVGGDCDRPVVVSRVFGGDTQPVWHSDGLLSGYRSKEYSGSGYNQLALDDSTGQNRVQ EEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEE LYSSSYQTHLHLGYLIQHENNSRGAFLGRGFDLKSDAYGALRAGQGLFVSTHPTTTAQPL EEECCCCEEEEEEEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCEEEEECCCCCCCCCC DVAPAADQLAGARQVADLASQASAANRAEGLDDGLHALDRFTQATHYSNAGSVAGGRTAG CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GGQGSANGFAMPVMLLASPAGMGLSTQDSLQATASQHVNVVSGQSTHVAAGKSFLVSAME CCCCCCCCCHHHHHEEECCCCCCCCCHHHHHHHHHHCEEEECCCCCEECCCHHHHHHHHH KLSLFVQNAGMKLFAAKGKVEIQAQSDAMALSALKDLTITSASGRLVLSADKEIWIGAGG HHHHHHHCCCCEEEEECCEEEEEECCCHHHHHHHHHCEEECCCCEEEEECCCEEEEECCC SYIKITPDLIENGTTGQILEKCASWDKPGAASMRLPAELPSAAKSCAWRMGGAAADSASS CEEEEEHHHHCCCCHHHHHHHHHCCCCCCCCCEECCHHCHHHHHHHHHHCCCCCCCCCCC VELG CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA