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The map label for this gene is ydcO [H]

Identifier: 238025297

GI number: 238025297

Start: 2449202

End: 2450392

Strand: Reverse

Name: ydcO [H]

Synonym: bglu_2g19710

Alternate gene names: 238025297

Gene position: 2450392-2449202 (Counterclockwise)

Preceding gene: 238025298

Following gene: 238025296

Centisome position: 86.67

GC content: 71.28

Gene sequence:

>1191_bases
ATGAGCAGTATCGCGGAATTGAAAACCGAGCGCGGCTTCTCGATGCGCGCAGCGGGCGCGGGCGCGCTGGCGTCGTTCGT
CGGCTTCGCCTCGACATTCACGCTGATCGTGAACGCGCTGACCAACGTCGGCGCCACGCGCGCGCAGGCCGCGTCGGGCC
TGATGGCCGTCTCGATCGTGATGGGGCTGGCCGGCATCGTGCTCAGCTACCGCACCCGGATGCCGGTCAGCGTCGCGTGG
TCGACGCCGGGCGCCGCGCTGCTGCTCGGCCTGGGCGCGGTGAAGGGCGGCTATCCGGCCGCGGTCGGCGCGCTCGTGCT
GACCGGCGTGCTGCTCACGCTGGCCGGGCTGTGGAGGCCGCTCGGCCGCGCGATCTCGAAGATTCCGCTGCCGATCGCCA
ACGCGATGCTCGCGGGGATCATCCTGAACCTCTGCGTCGCGCCGGTGCATGCCATCGCCCGCTATCCGCTTTACGTCGCG
CCGATCCTGCTGGTCTGGGTCGTGATGATGCGGATTCGCAAGATCCTCGCGGTGCCATGCGCGGCCGTGGCGACGCTGGT
GGTGATCGCGTTCATCGCGCACACCGGCAGCGTCGGCGCGGCCAGCATTCTGCCGCATCTCGCGCTGGTCGGGCCGGTGT
TCTCGGCGTCGACCATGGTGAGCGTCGCGGTGCCGCTGTTCATCGTGACGATGGCGTCGCAGAACATCCCGGGCGTCGCG
GTGCTCAACGTCAACGGCTACCGGCCCGAGGCGTCGCGGCTGTTTACCGCCACCGGGCTGTGCAGCCTGATCGCCGCGCC
GTTCGGCGGTCCGCCGATCGGGCTGGCCGCGATCACCGCCGCGCTGTGCGCGGGCGAGGAGGCCGGCCCCGACCAGGCGC
GGCGCTACTGGGCCGGCATCGTCTGCGGCGCCGCCTACATCGTGTACGGGCTGGCGGCCAGCGCCGCGACGCTGTTCATC
GCGGTCGCGCCGCCGATCATCATCGAAGCCGTCGCCGGTCTCGCGCTGATGAACGCGCTGGGCGGCGCGCTGCTCAATTC
GTTCGCCGACAAGGACGCGCGTGAAGCGGCAATCCTCACCTTCCTCGTGACCATGGCCGGCCATGCGTTCCTCGGCATCG
GCGGCGCGTTCTGGGGGCTGCTGACCGGCGTCGGGCTCACCTTCCTGCTGCGCCGCGCGCCGGCCGCGTGA

Upstream 100 bases:

>100_bases
CCGCGTACCAGGCGGGAACGCTGAACCAGGAATGGGGCGAGCCCAGTCACGACGCACTGACGCGGCAGCCGCCGCATGCA
ACCGATCTCACGGAGGATAG

Downstream 100 bases:

>100_bases
GGCCGGCCGGCGATGCGGTCCGCAGCAGTCCTGTAGTCACCTTCGAAACCAACGGAGACAACATGCAGCACACCATTGAG
AAAATCACCGCGACGCCGGT

Product: Benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSSIAELKTERGFSMRAAGAGALASFVGFASTFTLIVNALTNVGATRAQAASGLMAVSIVMGLAGIVLSYRTRMPVSVAW
STPGAALLLGLGAVKGGYPAAVGALVLTGVLLTLAGLWRPLGRAISKIPLPIANAMLAGIILNLCVAPVHAIARYPLYVA
PILLVWVVMMRIRKILAVPCAAVATLVVIAFIAHTGSVGAASILPHLALVGPVFSASTMVSVAVPLFIVTMASQNIPGVA
VLNVNGYRPEASRLFTATGLCSLIAAPFGGPPIGLAAITAALCAGEEAGPDQARRYWAGIVCGAAYIVYGLAASAATLFI
AVAPPIIIEAVAGLALMNALGGALLNSFADKDAREAAILTFLVTMAGHAFLGIGGAFWGLLTGVGLTFLLRRAPAA

Sequences:

>Translated_396_residues
MSSIAELKTERGFSMRAAGAGALASFVGFASTFTLIVNALTNVGATRAQAASGLMAVSIVMGLAGIVLSYRTRMPVSVAW
STPGAALLLGLGAVKGGYPAAVGALVLTGVLLTLAGLWRPLGRAISKIPLPIANAMLAGIILNLCVAPVHAIARYPLYVA
PILLVWVVMMRIRKILAVPCAAVATLVVIAFIAHTGSVGAASILPHLALVGPVFSASTMVSVAVPLFIVTMASQNIPGVA
VLNVNGYRPEASRLFTATGLCSLIAAPFGGPPIGLAAITAALCAGEEAGPDQARRYWAGIVCGAAYIVYGLAASAATLFI
AVAPPIIIEAVAGLALMNALGGALLNSFADKDAREAAILTFLVTMAGHAFLGIGGAFWGLLTGVGLTFLLRRAPAA
>Mature_395_residues
SSIAELKTERGFSMRAAGAGALASFVGFASTFTLIVNALTNVGATRAQAASGLMAVSIVMGLAGIVLSYRTRMPVSVAWS
TPGAALLLGLGAVKGGYPAAVGALVLTGVLLTLAGLWRPLGRAISKIPLPIANAMLAGIILNLCVAPVHAIARYPLYVAP
ILLVWVVMMRIRKILAVPCAAVATLVVIAFIAHTGSVGAASILPHLALVGPVFSASTMVSVAVPLFIVTMASQNIPGVAV
LNVNGYRPEASRLFTATGLCSLIAAPFGGPPIGLAAITAALCAGEEAGPDQARRYWAGIVCGAAYIVYGLAASAATLFIA
VAPPIIIEAVAGLALMNALGGALLNSFADKDAREAAILTFLVTMAGHAFLGIGGAFWGLLTGVGLTFLLRRAPAA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=369, Percent_Identity=39.0243902439024, Blast_Score=205, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 40019; Mature: 39888

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIAELKTERGFSMRAAGAGALASFVGFASTFTLIVNALTNVGATRAQAASGLMAVSIV
CCCHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
MGLAGIVLSYRTRMPVSVAWSTPGAALLLGLGAVKGGYPAAVGALVLTGVLLTLAGLWRP
HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LGRAISKIPLPIANAMLAGIILNLCVAPVHAIARYPLYVAPILLVWVVMMRIRKILAVPC
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
AAVATLVVIAFIAHTGSVGAASILPHLALVGPVFSASTMVSVAVPLFIVTMASQNIPGVA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
VLNVNGYRPEASRLFTATGLCSLIAAPFGGPPIGLAAITAALCAGEEAGPDQARRYWAGI
EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VCGAAYIVYGLAASAATLFIAVAPPIIIEAVAGLALMNALGGALLNSFADKDAREAAILT
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FLVTMAGHAFLGIGGAFWGLLTGVGLTFLLRRAPAA
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSIAELKTERGFSMRAAGAGALASFVGFASTFTLIVNALTNVGATRAQAASGLMAVSIV
CCHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
MGLAGIVLSYRTRMPVSVAWSTPGAALLLGLGAVKGGYPAAVGALVLTGVLLTLAGLWRP
HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LGRAISKIPLPIANAMLAGIILNLCVAPVHAIARYPLYVAPILLVWVVMMRIRKILAVPC
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
AAVATLVVIAFIAHTGSVGAASILPHLALVGPVFSASTMVSVAVPLFIVTMASQNIPGVA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
VLNVNGYRPEASRLFTATGLCSLIAAPFGGPPIGLAAITAALCAGEEAGPDQARRYWAGI
EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VCGAAYIVYGLAASAATLFIAVAPPIIIEAVAGLALMNALGGALLNSFADKDAREAAILT
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FLVTMAGHAFLGIGGAFWGLLTGVGLTFLLRRAPAA
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]