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The map label for this gene is rhmD [H]

Identifier: 238025296

GI number: 238025296

Start: 2447979

End: 2449139

Strand: Reverse

Name: rhmD [H]

Synonym: bglu_2g19700

Alternate gene names: 238025296

Gene position: 2449139-2447979 (Counterclockwise)

Preceding gene: 238025297

Following gene: 238025294

Centisome position: 86.62

GC content: 69.25

Gene sequence:

>1161_bases
ATGCAGCACACCATTGAGAAAATCACCGCGACGCCGGTGTTCGCGCACGGCAACGCGGAGATCGCCGGCGTCCGTTTTTC
CGGCAAGCTGTCGGGCGTGATCGTCGAGATCGAGACCTCGCAGGGCGTCACGGGCCACGGCTTCACGGCGATCACCGACG
AGGCCGTCGTCGCCGCCGCGATCGACCACGTCGCGGCGCCGAACCTGATCGGGATGGACCTCATGGCGCGTGAGCGCATT
CTCGACAAGCTGGTCTGGCTGCTGTGCCCGCGCGGGCAGACCGGTTACGCGGGCCATGTGATCTCCGCGATCGACATCGC
GGTCTGGGACGCGATCGGCAAGATCGCCGGCCTGCCGGTGTGGAAGATGCTCGGCGGTGCGCGCCCGGTGGTGCCGCTCT
ACACGACCTTCGGCTTCGCGTCGGTCGAGCGCGCGGAGCTCGTGCAGGCGGCGCGCGCGCTCGTCGCCTCGGGGCAGCGC
CGCATCAAGATGATCGTCGGCTATCACGCGCTCGCGCGCCGCAACGAAGGAAGGCCGCTCGAGCAGGTGGTCGCGGATGA
CGTGGCACGCGTGCGCGCCGTGCGCGACGCGGTGGGCGACGCCGCCGAGATCTACATCGACGCGAATTGCGGGCTCGATC
ACTACCACGCGTTGCGGCTTGCCGAGCGCGTCGCCGATTGCGACATCGGCTTCTTCGAGGAGCCGATCGCGGACAACGAC
CCCGCCAAGCTTGCCGACCTGAGAAAGCGCGGCGGCATTCCCATCGCCACCGGCCAGAGCGAGGGGCAATTGTTCCGGTT
CCGCGATTTCCTCGTGAACGATGCGGTCGACATCCTGCAGCCGAACGTGTGCGTGTGCGGCGGCTTCTCGGTGGCGACGC
GCGCGGCCGCGCTCGCGCAGGCGTTCGGCGTGCCGATCGACAACGGCGGCACCTTCCCGTTCCACAACATGCACCTGCAC
GGCGGGCTCGCGAACGGCGGCTCGGTCGAGTGGCACGTGGTGGCGGTCGACATCTGCCGGAACCTGTTCGCCGGCCTGCC
GGCCGAGCAGGACGGAACGCTGGCGCTGCCCGATGCGCCAGGGCTCGGCTTCGGAATCAACCGAGACGGCGTGCGCGAGT
TCTCGTCCGGCCCCGGATCGCAGGGTCACGGCAAGGCCTGA

Upstream 100 bases:

>100_bases
GGCTCACCTTCCTGCTGCGCCGCGCGCCGGCCGCGTGAGGCCGGCCGGCGATGCGGTCCGCAGCAGTCCTGTAGTCACCT
TCGAAACCAACGGAGACAAC

Downstream 100 bases:

>100_bases
GCGTGCGCCGGCGCGCCGGCAAGCACGCGGCGCGGGCCGCGTGCGGCCATCCCCGTCTGCGGCGGTCCGCACGATTCGCG
CGCGTGCCGCGCCATGGGCC

Product: mandelate racemase/muconate lactonizing protein

Products: NA

Alternate protein names: RhamD [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MQHTIEKITATPVFAHGNAEIAGVRFSGKLSGVIVEIETSQGVTGHGFTAITDEAVVAAAIDHVAAPNLIGMDLMARERI
LDKLVWLLCPRGQTGYAGHVISAIDIAVWDAIGKIAGLPVWKMLGGARPVVPLYTTFGFASVERAELVQAARALVASGQR
RIKMIVGYHALARRNEGRPLEQVVADDVARVRAVRDAVGDAAEIYIDANCGLDHYHALRLAERVADCDIGFFEEPIADND
PAKLADLRKRGGIPIATGQSEGQLFRFRDFLVNDAVDILQPNVCVCGGFSVATRAAALAQAFGVPIDNGGTFPFHNMHLH
GGLANGGSVEWHVVAVDICRNLFAGLPAEQDGTLALPDAPGLGFGINRDGVREFSSGPGSQGHGKA

Sequences:

>Translated_386_residues
MQHTIEKITATPVFAHGNAEIAGVRFSGKLSGVIVEIETSQGVTGHGFTAITDEAVVAAAIDHVAAPNLIGMDLMARERI
LDKLVWLLCPRGQTGYAGHVISAIDIAVWDAIGKIAGLPVWKMLGGARPVVPLYTTFGFASVERAELVQAARALVASGQR
RIKMIVGYHALARRNEGRPLEQVVADDVARVRAVRDAVGDAAEIYIDANCGLDHYHALRLAERVADCDIGFFEEPIADND
PAKLADLRKRGGIPIATGQSEGQLFRFRDFLVNDAVDILQPNVCVCGGFSVATRAAALAQAFGVPIDNGGTFPFHNMHLH
GGLANGGSVEWHVVAVDICRNLFAGLPAEQDGTLALPDAPGLGFGINRDGVREFSSGPGSQGHGKA
>Mature_386_residues
MQHTIEKITATPVFAHGNAEIAGVRFSGKLSGVIVEIETSQGVTGHGFTAITDEAVVAAAIDHVAAPNLIGMDLMARERI
LDKLVWLLCPRGQTGYAGHVISAIDIAVWDAIGKIAGLPVWKMLGGARPVVPLYTTFGFASVERAELVQAARALVASGQR
RIKMIVGYHALARRNEGRPLEQVVADDVARVRAVRDAVGDAAEIYIDANCGLDHYHALRLAERVADCDIGFFEEPIADND
PAKLADLRKRGGIPIATGQSEGQLFRFRDFLVNDAVDILQPNVCVCGGFSVATRAAALAQAFGVPIDNGGTFPFHNMHLH
GGLANGGSVEWHVVAVDICRNLFAGLPAEQDGTLALPDAPGLGFGINRDGVREFSSGPGSQGHGKA

Specific function: Catalyzes the dehydration of L-rhamnonate to 2-keto-3- deoxy-L-rhamnonate (KDR) [H]

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. RhamD subfamily [H]

Homologues:

Organism=Escherichia coli, GI48994953, Length=279, Percent_Identity=26.8817204301075, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.90 [H]

Molecular weight: Translated: 40859; Mature: 40859

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHTIEKITATPVFAHGNAEIAGVRFSGKLSGVIVEIETSQGVTGHGFTAITDEAVVAAA
CCCHHHHHHCCEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCEEECHHHHHHHH
IDHVAAPNLIGMDLMARERILDKLVWLLCPRGQTGYAGHVISAIDIAVWDAIGKIAGLPV
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCH
WKMLGGARPVVPLYTTFGFASVERAELVQAARALVASGQRRIKMIVGYHALARRNEGRPL
HHHHCCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHCCCCCHH
EQVVADDVARVRAVRDAVGDAAEIYIDANCGLDHYHALRLAERVADCDIGFFEEPIADND
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PAKLADLRKRGGIPIATGQSEGQLFRFRDFLVNDAVDILQPNVCVCGGFSVATRAAALAQ
CHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHH
AFGVPIDNGGTFPFHNMHLHGGLANGGSVEWHVVAVDICRNLFAGLPAEQDGTLALPDAP
HHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCEECCCCC
GLGFGINRDGVREFSSGPGSQGHGKA
CCCCCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQHTIEKITATPVFAHGNAEIAGVRFSGKLSGVIVEIETSQGVTGHGFTAITDEAVVAAA
CCCHHHHHHCCEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCEEECHHHHHHHH
IDHVAAPNLIGMDLMARERILDKLVWLLCPRGQTGYAGHVISAIDIAVWDAIGKIAGLPV
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCH
WKMLGGARPVVPLYTTFGFASVERAELVQAARALVASGQRRIKMIVGYHALARRNEGRPL
HHHHCCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHCCCCCHH
EQVVADDVARVRAVRDAVGDAAEIYIDANCGLDHYHALRLAERVADCDIGFFEEPIADND
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PAKLADLRKRGGIPIATGQSEGQLFRFRDFLVNDAVDILQPNVCVCGGFSVATRAAALAQ
CHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHH
AFGVPIDNGGTFPFHNMHLHGGLANGGSVEWHVVAVDICRNLFAGLPAEQDGTLALPDAP
HHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCEECCCCC
GLGFGINRDGVREFSSGPGSQGHGKA
CCCCCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA