Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is yukJ [H]
Identifier: 238025156
GI number: 238025156
Start: 2277897
End: 2278538
Strand: Reverse
Name: yukJ [H]
Synonym: bglu_2g18220
Alternate gene names: 238025156
Gene position: 2278538-2277897 (Counterclockwise)
Preceding gene: 238025157
Following gene: 238025155
Centisome position: 80.59
GC content: 63.55
Gene sequence:
>642_bases ATGTCACTGAACTATGGCCTGTTGAAGGGCACCGTTACCGGACATCTGCGCAACGCCGACGACGATCATTACCAGATTCT CGTGCATGCGGGCGACGAGGTGTTCCGGATCGCGGTGAACGTGAAATCGTCGGCGCCGCACGCGCCCTCGACGGTGCTGT TCGAATCGACGACGACGCTGCCCGACTCGCTGACCACGCAGCTGATGGCGGCCCAGACCGGCTTCACGAAGCTGGCGAGC AAGCCGGGCGGCCTCGCGATCGACTTCGTGCGCGGCGGCCTGGTGAATACCCAGGCGATGGCGCCGGTGCCGCCCGACGT GCCGGGGCAGAGCAATGACCTGAAGGACCGGCTGGAGAGCGCCGTCGTGAAGGCGATGGACGAGGCCGGCTCGCTGGTGT TCGCGTTCGGCGCGAAGTGGGGACCCGAGAACAAACCCGACCAGTATTTCAAGTTCGTGCCGGGCCAAGGCATCCACGAC ATTCACATGAACCAGGGCAATTCGGGTTCGTATAAAAAGGACAACGGCGTCTACCAGGACGGCTGCCTGATGCTGCGCTA TCCCGACGGCTCGTGGCTCGCGGTGTTCATCGCGTTCCAGTCGCAGACCTTCGATACCGACGATCACGGCAATCCGGCCT GA
Upstream 100 bases:
>100_bases ACCACGCACCGCGCGCGCATGCAACTCGCGTTTCGCAAAACTGTCAGTCACGGACGGCAGAATCGCTTTTCACTCACTTC ACTCACCACAGGACGATCCC
Downstream 100 bases:
>100_bases GCGCGGCGCTGCGCCGAGGGCGGCGGCGGCCGTGCCGCCCTCGGCACGGAGGCAAGAAAATATCGAAACCGTGCCGGATA GGTGTCGATGACCGGTCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MSLNYGLLKGTVTGHLRNADDDHYQILVHAGDEVFRIAVNVKSSAPHAPSTVLFESTTTLPDSLTTQLMAAQTGFTKLAS KPGGLAIDFVRGGLVNTQAMAPVPPDVPGQSNDLKDRLESAVVKAMDEAGSLVFAFGAKWGPENKPDQYFKFVPGQGIHD IHMNQGNSGSYKKDNGVYQDGCLMLRYPDGSWLAVFIAFQSQTFDTDDHGNPA
Sequences:
>Translated_213_residues MSLNYGLLKGTVTGHLRNADDDHYQILVHAGDEVFRIAVNVKSSAPHAPSTVLFESTTTLPDSLTTQLMAAQTGFTKLAS KPGGLAIDFVRGGLVNTQAMAPVPPDVPGQSNDLKDRLESAVVKAMDEAGSLVFAFGAKWGPENKPDQYFKFVPGQGIHD IHMNQGNSGSYKKDNGVYQDGCLMLRYPDGSWLAVFIAFQSQTFDTDDHGNPA >Mature_212_residues SLNYGLLKGTVTGHLRNADDDHYQILVHAGDEVFRIAVNVKSSAPHAPSTVLFESTTTLPDSLTTQLMAAQTGFTKLASK PGGLAIDFVRGGLVNTQAMAPVPPDVPGQSNDLKDRLESAVVKAMDEAGSLVFAFGAKWGPENKPDQYFKFVPGQGIHDI HMNQGNSGSYKKDNGVYQDGCLMLRYPDGSWLAVFIAFQSQTFDTDDHGNPA
Specific function: Unknown
COG id: COG5634
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019268 [H]
Pfam domain/function: PF10042 DUF2278 [H]
EC number: NA
Molecular weight: Translated: 22944; Mature: 22813
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLNYGLLKGTVTGHLRNADDDHYQILVHAGDEVFRIAVNVKSSAPHAPSTVLFESTTTL CCCCCCEEEEEEEEEECCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCC PDSLTTQLMAAQTGFTKLASKPGGLAIDFVRGGLVNTQAMAPVPPDVPGQSNDLKDRLES CHHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH AVVKAMDEAGSLVFAFGAKWGPENKPDQYFKFVPGQGIHDIHMNQGNSGSYKKDNGVYQD HHHHHHHHCCCEEEEECCCCCCCCCCCHHEEECCCCCEEEEECCCCCCCCCCCCCCCEEC GCLMLRYPDGSWLAVFIAFQSQTFDTDDHGNPA CEEEEECCCCCEEEEEEEEECCCCCCCCCCCCC >Mature Secondary Structure SLNYGLLKGTVTGHLRNADDDHYQILVHAGDEVFRIAVNVKSSAPHAPSTVLFESTTTL CCCCCEEEEEEEEEECCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCC PDSLTTQLMAAQTGFTKLASKPGGLAIDFVRGGLVNTQAMAPVPPDVPGQSNDLKDRLES CHHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH AVVKAMDEAGSLVFAFGAKWGPENKPDQYFKFVPGQGIHDIHMNQGNSGSYKKDNGVYQD HHHHHHHHCCCEEEEECCCCCCCCCCCHHEEECCCCCEEEEECCCCCCCCCCCCCCCEEC GCLMLRYPDGSWLAVFIAFQSQTFDTDDHGNPA CEEEEECCCCCEEEEEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9168598; 9384377; 8226620 [H]