Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238025123
Identifier: 238025123
GI number: 238025123
Start: 2227350
End: 2228036
Strand: Reverse
Name: 238025123
Synonym: bglu_2g17840
Alternate gene names: NA
Gene position: 2228036-2227350 (Counterclockwise)
Preceding gene: 238025124
Following gene: 238025122
Centisome position: 78.8
GC content: 64.34
Gene sequence:
>687_bases ATGTTGCAACGCATTTCGATCAAACTACTGTCGGCCGTCGCGCTGCTTGCCATGCTGGCTGCTTGCGCGGGCCCCGTTCA GCGCCTCGACTACACGGCTTTCAAGCGCAGCCAGCCGAAGTCGATCCTGGTGCTGCCGCCCGTCAACAACACTAATGACG TGAAGGCCAGCTTCGGCGTGCTGTCGCAGGTTACCCAGCCGTTGGCGGAATCGGGCTACTACGTGGTGCCGGTCGGCCCC ATGGAGGAGACCTTCAAGTACAACGGCCTGACAAGCCCCAACGACATCGCCGAGGTGTCGCCCGCCAAGCTGCGTGAAAT CTTTGGCGCCGACTCGGCGCTCTACATGACAGTCACCCGTTACGGCACGACCTACCAGGTGATCGACAGCGTGACCGCCG TCTCGGTGAGCGCCAAGCTGGTCGACCTGCGTACCGGCGACGTGCTCTGGACCGGTTCGCAGAGCGCCACCGACAAGGAA CTAGGCGGCATGCAAGGCGGCGTGCAGGGCGGCGGCATGGTCGGCCTGTTCGTCAACCTGGCCCAGGCGGCCGTCAAGCA GATCGCGAAGACGGTGACCGACGAGAGCGTCGATGTGGCCGGACTGACCAATGCCAAGCTGCTGTCGGCCGGGTCGCCCA ACGGCCTGCTGTATGGGCCGCGTTCGCCCAAGTACGGCACCGACTAA
Upstream 100 bases:
>100_bases CCAGCCCGTGACGGCTCCCGCCGCCGCCCAGCCTGCCGCCGCTTCGGCAGCCCGCCCCGACACCACTGCGCCGACCGCGA ATCACTGACCGGAGGTCCTC
Downstream 100 bases:
>100_bases GTGAGGTTTGCAAAAAGAGCCCGGCGGCTGTTGGCTGTTTCAGCATCCTGTTAAGCTCGGCCGTCGTGACAGACGGGCCA AGGAGATGGGTAAGCCAATC
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 228; Mature: 228
Protein sequence:
>228_residues MLQRISIKLLSAVALLAMLAACAGPVQRLDYTAFKRSQPKSILVLPPVNNTNDVKASFGVLSQVTQPLAESGYYVVPVGP MEETFKYNGLTSPNDIAEVSPAKLREIFGADSALYMTVTRYGTTYQVIDSVTAVSVSAKLVDLRTGDVLWTGSQSATDKE LGGMQGGVQGGGMVGLFVNLAQAAVKQIAKTVTDESVDVAGLTNAKLLSAGSPNGLLYGPRSPKYGTD
Sequences:
>Translated_228_residues MLQRISIKLLSAVALLAMLAACAGPVQRLDYTAFKRSQPKSILVLPPVNNTNDVKASFGVLSQVTQPLAESGYYVVPVGP MEETFKYNGLTSPNDIAEVSPAKLREIFGADSALYMTVTRYGTTYQVIDSVTAVSVSAKLVDLRTGDVLWTGSQSATDKE LGGMQGGVQGGGMVGLFVNLAQAAVKQIAKTVTDESVDVAGLTNAKLLSAGSPNGLLYGPRSPKYGTD >Mature_228_residues MLQRISIKLLSAVALLAMLAACAGPVQRLDYTAFKRSQPKSILVLPPVNNTNDVKASFGVLSQVTQPLAESGYYVVPVGP MEETFKYNGLTSPNDIAEVSPAKLREIFGADSALYMTVTRYGTTYQVIDSVTAVSVSAKLVDLRTGDVLWTGSQSATDKE LGGMQGGVQGGGMVGLFVNLAQAAVKQIAKTVTDESVDVAGLTNAKLLSAGSPNGLLYGPRSPKYGTD
Specific function: Unknown
COG id: COG4380
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008517 [H]
Pfam domain/function: PF05643 DUF799 [H]
EC number: NA
Molecular weight: Translated: 23951; Mature: 23951
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQRISIKLLSAVALLAMLAACAGPVQRLDYTAFKRSQPKSILVLPPVNNTNDVKASFGV CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH LSQVTQPLAESGYYVVPVGPMEETFKYNGLTSPNDIAEVSPAKLREIFGADSALYMTVTR HHHHHHHHHHCCCEEEECCCHHHHHEECCCCCCCHHHHCCHHHHHHHHCCCCEEEEEEEC YGTTYQVIDSVTAVSVSAKLVDLRTGDVLWTGSQSATDKELGGMQGGVQGGGMVGLFVNL CCCHHHHHHHHHHHEEEEEEEEEECCCEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHH AQAAVKQIAKTVTDESVDVAGLTNAKLLSAGSPNGLLYGPRSPKYGTD HHHHHHHHHHHHCCCCCCEECCCCCEEEECCCCCCEEECCCCCCCCCC >Mature Secondary Structure MLQRISIKLLSAVALLAMLAACAGPVQRLDYTAFKRSQPKSILVLPPVNNTNDVKASFGV CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH LSQVTQPLAESGYYVVPVGPMEETFKYNGLTSPNDIAEVSPAKLREIFGADSALYMTVTR HHHHHHHHHHCCCEEEECCCHHHHHEECCCCCCCHHHHCCHHHHHHHHCCCCEEEEEEEC YGTTYQVIDSVTAVSVSAKLVDLRTGDVLWTGSQSATDKELGGMQGGVQGGGMVGLFVNL CCCHHHHHHHHHHHEEEEEEEEEECCCEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHH AQAAVKQIAKTVTDESVDVAGLTNAKLLSAGSPNGLLYGPRSPKYGTD HHHHHHHHHHHHCCCCCCEECCCCCEEEECCCCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]