Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238025092
Identifier: 238025092
GI number: 238025092
Start: 2193688
End: 2195112
Strand: Reverse
Name: 238025092
Synonym: bglu_2g17490
Alternate gene names: NA
Gene position: 2195112-2193688 (Counterclockwise)
Preceding gene: 238025093
Following gene: 238025088
Centisome position: 77.64
GC content: 69.82
Gene sequence:
>1425_bases ATGCGTCGAATGGTTTGCCGCCTCATGCTGGCCCTCGGGTGCTGGCTCGCGATCCTGCCTTACGCCTTCGCCGGCGCGCC CCAGCAACTGACGGTCGCGCTCTATCCCTGGGTGCCCCGCGTCGGGCAGTTCCGGCAGGCGATCGAAACGGAATGGAAGA AGGTGCACCCCGAGGTCGCGCTGCAGTTCGTGGCCGACAGCGAATGGGACGGCGGCTACTCGGGCGATCCGCCCGCGCGC GCGGATGTCTACATCTACGACGCGATCTTCTTCGACTACTTTCGCGGCAGGAACTGGCTCGAACCGCTTGCGGCCAGCGA GGTGCAGAACATCGGCGACTACCTGCCCTACGCGATCGACGGCCTGAGGGTGGGGGACCGCTACTACAGCCTGCCGCAGC TGGGCTGCGCGAACCTGCTGTTCTATCACAAGGACGATGCGGCACTGGCGGCCGCCACCACGCTCACGCAGGTCCACGCG GCGCTGCAGCAATGCACCTACACGAGCGAGATACCGCCGGACCGGCGCGGCCTGATGCTCGACATGTCGGGCGGCACCAC CAGCAGCGCGCTCTACCTCGACGCGGCCCACAGCCAGAACGGCGCGTATCCGCTGCCGCTGCCGTGGAGCGCCGCGCAAC TCGATCCGCACGCGGTGGCGAGCCTGCGCACGCTGCTGGCGATGGCCAGCTTCCCGAACGCCACGGCGAGCCTGCCGGGC CAGTACGACCGCTCCGTCTGGTTCAGCAACGGCGAGGGGCGCGCGGTGATCGGCTATTCCGAATCGATGTCGGCGATGAG CGAGGCGACGCGCCAGGATATCGCCTTCAAGATCATGCCGCTGTCCGACCATGCCGAGCAGCCGCTCTTCTATGCCGACG TGATCGGCGTGAACACCACCACCCAGCTGCGCGGCACGCGCGCGCTGGCGGTGCAACTCGCCAACCTGATCGCCGCCTCG GCGACCATGCTCGAGAGCATCGGCCCCGATGCGAGCGGGGTGCCGCAATACCTGTTCGCCACGCGGCGCAGCGTGCTCGA CACGCTGGCGGCCCGCTATCCGCTGTACGCGAAGATGAACGCGTTGCTCGACGCCGGCCAGCCGGCCATGTTCAAGCTCG ACGCGCAGGCCCGCGACTGGCTCGCGACCATGAGCCCGCCGATCCAGCAAAGCGCACAGGCCAATTACGCATGCGGCTGC GATGTCGACACCACCCGGCCGATCGCCGACTACCGCGCCGCGCAGGCGGCCTGCCCGGCCGTGTGCGCGGCCCAGGGCGG CTGGAACGGGCAGTGGACCAATCGTGCGCCGGCCGCGCCCGCCGGCACGTCGGCGTGCGGCTGCAATCGCTGCCCGAGCG CGGCGCCCACGGCCTCGATGGTGCCGGCCGCGCGGGCGCCGAGGTTCGGGAAGTTCGCGCCCTGA
Upstream 100 bases:
>100_bases CCACGGCCGCGGGCCGACCCACCATTTTCACGCGCTCTGGCGCTAGCGCGCCGGACGACCCCGCCGGGGGGACCGGCGCA TCAAAGTCCAAGGAAAAAAC
Downstream 100 bases:
>100_bases CGGCACGGCTGGGCGAGACCCGGATCGAAACGCAGCGGGCCATGCCCCTGGGTTCAGTCCTGCCTGGCCACGGCCCTGCC GACGCGATGGAACGCGCGCC
Product: putative thiaminase I
Products: NA
Alternate protein names: Thiaminase I; Thiamine pyridinylase [H]
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MRRMVCRLMLALGCWLAILPYAFAGAPQQLTVALYPWVPRVGQFRQAIETEWKKVHPEVALQFVADSEWDGGYSGDPPAR ADVYIYDAIFFDYFRGRNWLEPLAASEVQNIGDYLPYAIDGLRVGDRYYSLPQLGCANLLFYHKDDAALAAATTLTQVHA ALQQCTYTSEIPPDRRGLMLDMSGGTTSSALYLDAAHSQNGAYPLPLPWSAAQLDPHAVASLRTLLAMASFPNATASLPG QYDRSVWFSNGEGRAVIGYSESMSAMSEATRQDIAFKIMPLSDHAEQPLFYADVIGVNTTTQLRGTRALAVQLANLIAAS ATMLESIGPDASGVPQYLFATRRSVLDTLAARYPLYAKMNALLDAGQPAMFKLDAQARDWLATMSPPIQQSAQANYACGC DVDTTRPIADYRAAQAACPAVCAAQGGWNGQWTNRAPAAPAGTSACGCNRCPSAAPTASMVPAARAPRFGKFAP
Sequences:
>Translated_474_residues MRRMVCRLMLALGCWLAILPYAFAGAPQQLTVALYPWVPRVGQFRQAIETEWKKVHPEVALQFVADSEWDGGYSGDPPAR ADVYIYDAIFFDYFRGRNWLEPLAASEVQNIGDYLPYAIDGLRVGDRYYSLPQLGCANLLFYHKDDAALAAATTLTQVHA ALQQCTYTSEIPPDRRGLMLDMSGGTTSSALYLDAAHSQNGAYPLPLPWSAAQLDPHAVASLRTLLAMASFPNATASLPG QYDRSVWFSNGEGRAVIGYSESMSAMSEATRQDIAFKIMPLSDHAEQPLFYADVIGVNTTTQLRGTRALAVQLANLIAAS ATMLESIGPDASGVPQYLFATRRSVLDTLAARYPLYAKMNALLDAGQPAMFKLDAQARDWLATMSPPIQQSAQANYACGC DVDTTRPIADYRAAQAACPAVCAAQGGWNGQWTNRAPAAPAGTSACGCNRCPSAAPTASMVPAARAPRFGKFAP >Mature_474_residues MRRMVCRLMLALGCWLAILPYAFAGAPQQLTVALYPWVPRVGQFRQAIETEWKKVHPEVALQFVADSEWDGGYSGDPPAR ADVYIYDAIFFDYFRGRNWLEPLAASEVQNIGDYLPYAIDGLRVGDRYYSLPQLGCANLLFYHKDDAALAAATTLTQVHA ALQQCTYTSEIPPDRRGLMLDMSGGTTSSALYLDAAHSQNGAYPLPLPWSAAQLDPHAVASLRTLLAMASFPNATASLPG QYDRSVWFSNGEGRAVIGYSESMSAMSEATRQDIAFKIMPLSDHAEQPLFYADVIGVNTTTQLRGTRALAVQLANLIAAS ATMLESIGPDASGVPQYLFATRRSVLDTLAARYPLYAKMNALLDAGQPAMFKLDAQARDWLATMSPPIQQSAQANYACGC DVDTTRPIADYRAAQAACPAVCAAQGGWNGQWTNRAPAAPAGTSACGCNRCPSAAPTASMVPAARAPRFGKFAP
Specific function: Degrades thiamine by replacing its thiazole moiety with a wide range of nucleophiles [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: =2.5.1.2 [H]
Molecular weight: Translated: 51162; Mature: 51162
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRMVCRLMLALGCWLAILPYAFAGAPQQLTVALYPWVPRVGQFRQAIETEWKKVHPEVA CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCHHHH LQFVADSEWDGGYSGDPPARADVYIYDAIFFDYFRGRNWLEPLAASEVQNIGDYLPYAID EEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHC GLRVGDRYYSLPQLGCANLLFYHKDDAALAAATTLTQVHAALQQCTYTSEIPPDRRGLML CEEECCHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE DMSGGTTSSALYLDAAHSQNGAYPLPLPWSAAQLDPHAVASLRTLLAMASFPNATASLPG EECCCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC QYDRSVWFSNGEGRAVIGYSESMSAMSEATRQDIAFKIMPLSDHAEQPLFYADVIGVNTT CCCCCEEEECCCCCEEEECHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEEECCCCC TQLRGTRALAVQLANLIAASATMLESIGPDASGVPQYLFATRRSVLDTLAARYPLYAKMN HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH ALLDAGQPAMFKLDAQARDWLATMSPPIQQSAQANYACGCDVDTTRPIADYRAAQAACPA HHHCCCCCCEEEECCHHHHHHHHCCCCHHHHCCCCCEECCCCCCCCCHHHHHHHHHHCCH VCAAQGGWNGQWTNRAPAAPAGTSACGCNRCPSAAPTASMVPAARAPRFGKFAP HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC >Mature Secondary Structure MRRMVCRLMLALGCWLAILPYAFAGAPQQLTVALYPWVPRVGQFRQAIETEWKKVHPEVA CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCHHHH LQFVADSEWDGGYSGDPPARADVYIYDAIFFDYFRGRNWLEPLAASEVQNIGDYLPYAID EEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHC GLRVGDRYYSLPQLGCANLLFYHKDDAALAAATTLTQVHAALQQCTYTSEIPPDRRGLML CEEECCHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE DMSGGTTSSALYLDAAHSQNGAYPLPLPWSAAQLDPHAVASLRTLLAMASFPNATASLPG EECCCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC QYDRSVWFSNGEGRAVIGYSESMSAMSEATRQDIAFKIMPLSDHAEQPLFYADVIGVNTT CCCCCEEEECCCCCEEEECHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEEECCCCC TQLRGTRALAVQLANLIAASATMLESIGPDASGVPQYLFATRRSVLDTLAARYPLYAKMN HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH ALLDAGQPAMFKLDAQARDWLATMSPPIQQSAQANYACGCDVDTTRPIADYRAAQAACPA HHHCCCCCCEEEECCHHHHHHHHCCCCHHHHCCCCCEECCCCCCCCCHHHHHHHHHHCCH VCAAQGGWNGQWTNRAPAAPAGTSACGCNRCPSAAPTASMVPAARAPRFGKFAP HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8631946; 9843405 [H]