Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
---|---|
Accession | NC_012721 |
Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is yhhW [C]
Identifier: 238025088
GI number: 238025088
Start: 2189333
End: 2190058
Strand: Reverse
Name: yhhW [C]
Synonym: bglu_2g17440
Alternate gene names: 238025088
Gene position: 2190058-2189333 (Counterclockwise)
Preceding gene: 238025092
Following gene: 238025075
Centisome position: 77.46
GC content: 69.56
Gene sequence:
>726_bases ATGATCGAAGTCAGAAACGCCAGCGATCGCGGCCGCGCCGAGCACGGCTGGCTCAGCTCCCGCCACACCTTCTCGTTCGC CAACTACTACGACCCGCAGCAGGTCGGCTTCTCGGACCTGCTGGTGATCAACGACGATCGCGTCGCGCCGGGCCGCGGCT TCGGCACCCATCCGCACCGCGACATGGAAATCCTCTCCTACGTGCTGGAAGGCGCGCTCGAACACAAGGATTCGATGGGT ACCGGCTCGGTGATCGTGCCGGGCGACGTGCAACTGATGAGCGCCGGCACGGGCGTCGCGCACAGCGAGTTCAACCACTC GCGCGATGCCGACGTCCACTTCCTGCAGATCTGGATCGGACCGGCGCAGAAGGGCGCGCAGCCGCGCTATCAGCAGGCCA GCGTCGACGCGGCGCGCAAGCGCGGCCGGCTGCAACTGGTGGTGTCGCCCGATGCCGCCGACGGTTCGCTCGCGATCCGC CAGGACACGCGGATCTATGCCGGGCTGTTCGACGGCGCCGAAACGGCCAGCCTCGCGCTGCCGGACGGCCGCTTCGGCTA CGTTCACGTGGCCCGCGGCAGCGTGTCGGTGAACGGCGTCGCGCTCGCTGAGGGCGACGGCGCGCGGATTCGCGGCGAGC GGGAGCTGACGTTCTCGGCCGGTCGCGATGCCGAGGTGCTGGTGTTCGACCTGCGCCCGCTCGAGGTGACGGCCGACTGG GCCTGA
Upstream 100 bases:
>100_bases TCTCATGCGCGATTTATTCATCAAGTTGGTTGACTTAAGATGCATCCCATCGAGCAACGCCCTGTCATCGTGATGCGGCG GGCTCAACCGGAGATTCGTC
Downstream 100 bases:
>100_bases GGCCCGGCCCGAGCCGGCTACGCCAGCGCCACGGCAGGAGGGGGCGGCGCGGCCGGCTCGCGGCGGCGGCCGTCTTGCTG CGTGATCGATGGGCTGCGTC
Product: Pirin-like protein
Products: NA
Alternate protein names: Putative quercetinase; Pirin-like protein sll1773 [H]
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MIEVRNASDRGRAEHGWLSSRHTFSFANYYDPQQVGFSDLLVINDDRVAPGRGFGTHPHRDMEILSYVLEGALEHKDSMG TGSVIVPGDVQLMSAGTGVAHSEFNHSRDADVHFLQIWIGPAQKGAQPRYQQASVDAARKRGRLQLVVSPDAADGSLAIR QDTRIYAGLFDGAETASLALPDGRFGYVHVARGSVSVNGVALAEGDGARIRGERELTFSAGRDAEVLVFDLRPLEVTADW A
Sequences:
>Translated_241_residues MIEVRNASDRGRAEHGWLSSRHTFSFANYYDPQQVGFSDLLVINDDRVAPGRGFGTHPHRDMEILSYVLEGALEHKDSMG TGSVIVPGDVQLMSAGTGVAHSEFNHSRDADVHFLQIWIGPAQKGAQPRYQQASVDAARKRGRLQLVVSPDAADGSLAIR QDTRIYAGLFDGAETASLALPDGRFGYVHVARGSVSVNGVALAEGDGARIRGERELTFSAGRDAEVLVFDLRPLEVTADW A >Mature_241_residues MIEVRNASDRGRAEHGWLSSRHTFSFANYYDPQQVGFSDLLVINDDRVAPGRGFGTHPHRDMEILSYVLEGALEHKDSMG TGSVIVPGDVQLMSAGTGVAHSEFNHSRDADVHFLQIWIGPAQKGAQPRYQQASVDAARKRGRLQLVVSPDAADGSLAIR QDTRIYAGLFDGAETASLALPDGRFGYVHVARGSVSVNGVALAEGDGARIRGERELTFSAGRDAEVLVFDLRPLEVTADW A
Specific function: Putative quercetin 2,3-dioxygenase [H]
COG id: COG1741
COG function: function code R; Pirin-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pirin family [H]
Homologues:
Organism=Homo sapiens, GI66363697, Length=174, Percent_Identity=28.1609195402299, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI4505823, Length=174, Percent_Identity=28.1609195402299, Blast_Score=72, Evalue=6e-13, Organism=Escherichia coli, GI1789847, Length=234, Percent_Identity=50, Blast_Score=240, Evalue=6e-65, Organism=Escherichia coli, GI1789493, Length=236, Percent_Identity=33.4745762711864, Blast_Score=138, Evalue=3e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR012093 - InterPro: IPR003829 - InterPro: IPR014710 [H]
Pfam domain/function: PF02678 Pirin [H]
EC number: =1.13.11.24 [H]
Molecular weight: Translated: 26128; Mature: 26128
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEVRNASDRGRAEHGWLSSRHTFSFANYYDPQQVGFSDLLVINDDRVAPGRGFGTHPHR CEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCEEEEEECCCCCCCCCCCCCCCCC DMEILSYVLEGALEHKDSMGTGSVIVPGDVQLMSAGTGVAHSEFNHSRDADVHFLQIWIG HHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCCCCEECCCCCCCCCCEEEEEEEEC PAQKGAQPRYQQASVDAARKRGRLQLVVSPDAADGSLAIRQDTRIYAGLFDGAETASLAL CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCCEEEEEC PDGRFGYVHVARGSVSVNGVALAEGDGARIRGERELTFSAGRDAEVLVFDLRPLEVTADW CCCCEEEEEEECCCEEECEEEEECCCCCEEECCEEEEEECCCCCEEEEEECEEEEEEECC A C >Mature Secondary Structure MIEVRNASDRGRAEHGWLSSRHTFSFANYYDPQQVGFSDLLVINDDRVAPGRGFGTHPHR CEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCEEEEEECCCCCCCCCCCCCCCCC DMEILSYVLEGALEHKDSMGTGSVIVPGDVQLMSAGTGVAHSEFNHSRDADVHFLQIWIG HHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCCCCEECCCCCCCCCCEEEEEEEEC PAQKGAQPRYQQASVDAARKRGRLQLVVSPDAADGSLAIRQDTRIYAGLFDGAETASLAL CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCCEEEEEC PDGRFGYVHVARGSVSVNGVALAEGDGARIRGERELTFSAGRDAEVLVFDLRPLEVTADW CCCCEEEEEEECCCEEECEEEEECCCCCEEECCEEEEEECCCCCEEEEEECEEEEEEECC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]