Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is yjiN [H]
Identifier: 238025047
GI number: 238025047
Start: 2137761
End: 2139050
Strand: Reverse
Name: yjiN [H]
Synonym: bglu_2g17040
Alternate gene names: 238025047
Gene position: 2139050-2137761 (Counterclockwise)
Preceding gene: 238025049
Following gene: 238025046
Centisome position: 75.66
GC content: 71.01
Gene sequence:
>1290_bases ATGCGGGACAAGGCAGCGGAATTGCAGGCGAGCAAGCGGCGCGCGCTCGGATTGCTGATCGGCGTGACGGTCGTGTTCGT CGCCACGCTGTGGTTTCCGGGCGTGGGCTGGGTGGGCGGCGTGAAGGCCGTGGCCGAGGCCGCGATGGTCGGCGCGCTGG CCGACTGGTTCGCGGTGGCGGCGCTGTTCAGGCGCGTGCCGATTCCGATCGTATCGCGCCATACCGAGATCGTGCCGCGC AACCAGGCACGCATCGCCGACAATCTCGCGCAGTTCGTCCATGACCGCTTCCTCGATCCGGCCTCGATCGTCGCGCTGAT GCGGCGCCACGACCCGGCCGAGCGCCTCGCGCAGTGGCTCGTCGAGCCGGCCAACACGGCGCTGCTGGGCGGCTATGTGG GGCGGCTCGCGAGCCTCGCGCTGGACCTGGTCGACGACGCGCGGGTGCGCGGCTTCATCCGCGACGCGCTGCGCGCCGCG CTCGACCGGCTCGACCTGTCGCGCTCGGCGGGCGCGATCCTCGAGACGCTGACGCGCGACGGGCGCCACCAGCAGCTGCT CGACGACGGCATCGCGCAGCTGGTGGCGCTGCTGCGCGAGCCCGACAAGCGCGCCGCGATCGCCGCATATATCGTCGATT GGCTGAAGGACCGCTATCCCAAGATGGAGCGCGTGATGCCGACCGCCTGGATCAGCGAGAGCGGTGCCGAGCTGATCGCG AACATCGTCACGCGCGTGCTGGTGCAGATCGGCGAGGATCCGGACCATCAATTGCGGCGCAGCTTCGATGCGGCCGCCGA GCGGCTGGTCGAGCGTCTCAAGACGGACCCGCGGTTTCTCGAGAAGGGCGAGGAGCTGAAGCGCTACCTGCGCGACGGCG AGGCGTTCACCGGCTACGTGGCCGAGCTCTGGGCCCAACTGCGCGACTGGCTCAAGGCAGATCTCGCGCGCCAGGATTCG CTGCTGCACCGGCAGGCCGCCGCGCTCGGCGGCTGGCTCGGCGAGCGGCTCGCGGCGAGCCCGGCGCTGCGAGCCTCGAT GAACGAGCACGTCGAGAAGGCCGCCGCCGAGCTGGCGCCCGAGTTCGCCGCCTTCCTCACGCGCCATATCGGCGACACGG TCCGCAACTGGGACCCGGCGGAGATGTCGCGTCAGGTCGAGCTCAACATCGGCCGCGACCTGCAGAGCATTCGCATCAAC GGCACGGTGGTGGGCGGCCTGATCGGGCTCGCGCTGTATCTGGTGACCTGCGCGGCGCGCTGGGCCGGCGCCTGGGTGCC GCCGCACTGA
Upstream 100 bases:
>100_bases TGAGGCATGCCGCCGCGGCGCGGCCGTGCGAGCACGCAACAACCAGGGGGCCGCCCGTCGGCGAGGGCGGCGTGATGCTG ACGATCCGGGACGGGAATCG
Downstream 100 bases:
>100_bases GCCCGGCGCAGGCCGCCTGCATGCCGGGTGCGCCCCGCCCCGCCGGCGCTTATCACCGTGGCGCGACGCGTTGTGGTGTA ATCGCGCGGCCGCAAGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MRDKAAELQASKRRALGLLIGVTVVFVATLWFPGVGWVGGVKAVAEAAMVGALADWFAVAALFRRVPIPIVSRHTEIVPR NQARIADNLAQFVHDRFLDPASIVALMRRHDPAERLAQWLVEPANTALLGGYVGRLASLALDLVDDARVRGFIRDALRAA LDRLDLSRSAGAILETLTRDGRHQQLLDDGIAQLVALLREPDKRAAIAAYIVDWLKDRYPKMERVMPTAWISESGAELIA NIVTRVLVQIGEDPDHQLRRSFDAAAERLVERLKTDPRFLEKGEELKRYLRDGEAFTGYVAELWAQLRDWLKADLARQDS LLHRQAAALGGWLGERLAASPALRASMNEHVEKAAAELAPEFAAFLTRHIGDTVRNWDPAEMSRQVELNIGRDLQSIRIN GTVVGGLIGLALYLVTCAARWAGAWVPPH
Sequences:
>Translated_429_residues MRDKAAELQASKRRALGLLIGVTVVFVATLWFPGVGWVGGVKAVAEAAMVGALADWFAVAALFRRVPIPIVSRHTEIVPR NQARIADNLAQFVHDRFLDPASIVALMRRHDPAERLAQWLVEPANTALLGGYVGRLASLALDLVDDARVRGFIRDALRAA LDRLDLSRSAGAILETLTRDGRHQQLLDDGIAQLVALLREPDKRAAIAAYIVDWLKDRYPKMERVMPTAWISESGAELIA NIVTRVLVQIGEDPDHQLRRSFDAAAERLVERLKTDPRFLEKGEELKRYLRDGEAFTGYVAELWAQLRDWLKADLARQDS LLHRQAAALGGWLGERLAASPALRASMNEHVEKAAAELAPEFAAFLTRHIGDTVRNWDPAEMSRQVELNIGRDLQSIRIN GTVVGGLIGLALYLVTCAARWAGAWVPPH >Mature_429_residues MRDKAAELQASKRRALGLLIGVTVVFVATLWFPGVGWVGGVKAVAEAAMVGALADWFAVAALFRRVPIPIVSRHTEIVPR NQARIADNLAQFVHDRFLDPASIVALMRRHDPAERLAQWLVEPANTALLGGYVGRLASLALDLVDDARVRGFIRDALRAA LDRLDLSRSAGAILETLTRDGRHQQLLDDGIAQLVALLREPDKRAAIAAYIVDWLKDRYPKMERVMPTAWISESGAELIA NIVTRVLVQIGEDPDHQLRRSFDAAAERLVERLKTDPRFLEKGEELKRYLRDGEAFTGYVAELWAQLRDWLKADLARQDS LLHRQAAALGGWLGERLAASPALRASMNEHVEKAAAELAPEFAAFLTRHIGDTVRNWDPAEMSRQVELNIGRDLQSIRIN GTVVGGLIGLALYLVTCAARWAGAWVPPH
Specific function: Unknown
COG id: COG2733
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790793, Length=414, Percent_Identity=51.207729468599, Blast_Score=426, Evalue=1e-120,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007383 [H]
Pfam domain/function: PF04286 DUF445 [H]
EC number: NA
Molecular weight: Translated: 47481; Mature: 47481
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDKAAELQASKRRALGLLIGVTVVFVATLWFPGVGWVGGVKAVAEAAMVGALADWFAVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALFRRVPIPIVSRHTEIVPRNQARIADNLAQFVHDRFLDPASIVALMRRHDPAERLAQWL HHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH VEPANTALLGGYVGRLASLALDLVDDARVRGFIRDALRAALDRLDLSRSAGAILETLTRD HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GRHQQLLDDGIAQLVALLREPDKRAAIAAYIVDWLKDRYPKMERVMPTAWISESGAELIA CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHH NIVTRVLVQIGEDPDHQLRRSFDAAAERLVERLKTDPRFLEKGEELKRYLRDGEAFTGYV HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHCCCHHHHHH AELWAQLRDWLKADLARQDSLLHRQAAALGGWLGERLAASPALRASMNEHVEKAAAELAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH EFAAFLTRHIGDTVRNWDPAEMSRQVELNIGRDLQSIRINGTVVGGLIGLALYLVTCAAR HHHHHHHHHHHHHHCCCCHHHHCCCEECCCCCCHHHEEECCHHHHHHHHHHHHHHHHHHH WAGAWVPPH HHCCCCCCC >Mature Secondary Structure MRDKAAELQASKRRALGLLIGVTVVFVATLWFPGVGWVGGVKAVAEAAMVGALADWFAVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALFRRVPIPIVSRHTEIVPRNQARIADNLAQFVHDRFLDPASIVALMRRHDPAERLAQWL HHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH VEPANTALLGGYVGRLASLALDLVDDARVRGFIRDALRAALDRLDLSRSAGAILETLTRD HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GRHQQLLDDGIAQLVALLREPDKRAAIAAYIVDWLKDRYPKMERVMPTAWISESGAELIA CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHH NIVTRVLVQIGEDPDHQLRRSFDAAAERLVERLKTDPRFLEKGEELKRYLRDGEAFTGYV HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHCCCHHHHHH AELWAQLRDWLKADLARQDSLLHRQAAALGGWLGERLAASPALRASMNEHVEKAAAELAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH EFAAFLTRHIGDTVRNWDPAEMSRQVELNIGRDLQSIRINGTVVGGLIGLALYLVTCAAR HHHHHHHHHHHHHHCCCCHHHHCCCEECCCCCCHHHEEECCHHHHHHHHHHHHHHHHHHH WAGAWVPPH HHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]