Click here to switch to the map view.

The map label for this gene is dhaR [C]

Identifier: 238025004

GI number: 238025004

Start: 2088920

End: 2090551

Strand: Reverse

Name: dhaR [C]

Synonym: bglu_2g16610

Alternate gene names: 238025004

Gene position: 2090551-2088920 (Counterclockwise)

Preceding gene: 238025005

Following gene: 238025003

Centisome position: 73.94

GC content: 72.18

Gene sequence:

>1632_bases
ATGTTGCCTTTGCCTACCACGGACGAACTGGAATCCCTCTGGCAAGAATCGGTCGCGCAAGGCGGCGACAACGGCACGTT
CCTTTCCACGCTGCTCGCCAACGTGAAGGGCTGGCTGCCGGTCAGCGAGATCATCCTGACCGTGGAGCCGGGGGGCGCGG
GCAGCTGGGTGACGCCCGTCTCGGCGGCCCAGCCGCCGCTGTGCTGGTCGGCCAGCGGCATGGCCTGCGGCGCCGGCACG
CTCGCCGAGCGCGCCGCCGAGACGCTCGTGCTGCGCTTCGCCGGGCGCCGTCTCGGCACCCTGCAGCTGTTCTGGCTGCC
GGGCGCGGGCGCCGACGCGAACAGCTCGGCACTGGTTGCCGAACTGGTGCGGCGCCTGCGCTGGGTGGTGCTGCGGCACA
CGTTTCATGCGGCCAACCTCGGGCCGATGGCGCGCTCGACGCTTTGGGTGGGCGCGGGCCGCGCGATCCAGCGCTTCACC
GAGCATCTCGAGGTGGCCGTGCGCAGCCATTTCCCGGTCTACATCGCCGGCGAGTTCGGCACCGATCCGAGCTCGGTGGC
GGGCGCGCTGCACGTGTTCCGCTGCGGCGTCGATGCGCCGTTCGTCGAGATCCGCGGCGCGCATCCCGAAGGCTCGCCGG
CCGAATGGTTCGCGCGCGCCAAGGGCGGCACGCTCTACATCAACGGCATCCAGGACATGGATCCGGCGCTGTTGTGCGAA
CTGCCCGGCTATCTGCCGTCGCGGCTCGGGCAGTGGGCGAGCTCGCCCGCCAAGGGCGAGAGCTGCCATCTGGTTTCGTC
GGGGCTCGCGCGCGCCGAGCAACTGATGGAGGCGCCGGCGCTGCCGCGCGCGCTGATGGCCGAGCTCAGTCTCGTCGAGC
TTCACGTGCCGCCGCTGCGCGCGCGCATCGACGATCTGCGCGCGCTGTTCTCGCACGTCTGCCAGTGCGTCGGTCACGAC
ATCGAGCTGCATTGCGACGACGATGCCTGGCAGTCGCTCGAACGCCGCGCCTGGCCGGAAAACCAGCTCGAACTGACGCG
GCTGGCCGCGCAGCTGGCGCTGTCGGTGCAGGACCGCAGCGTGCGGCTCAGCGACCTCGCACCCGCGGCGGCGCCGGTCG
CCTTGCTGCTGGCCCCGGCCGTGCAGGACGCGGCAGCGCCCGCGGACGATGCGCCCGCCGCCGCCGGCGAGGACGCCGCG
AGCGGCGAGCGCGCCGACGCGCGAGCGCTGCCACGCAGCGCCGCCTCCTGGGCGCAGTACGTGCTGCAGGCCGAGCATGG
CGCGGGCGGCGAGGTGGAGGCGATGCTGCCGCGGGCGCTGGTGCGCGCGCTGCGCCATCTCGCGGCGCACTACTGCGATC
CGCTGACCCAGCCCGATCTCGCCTCCGCTGCGTGCACCAGCGCCTCGCACCTCACGGCGCTGTTCCGGCGGCATCTCGGC
GTCAACTTCAAGACCCTGCTCCAGCACATGCGCGTGCAGCGCGCGCGCGACCTGCTCTGCGAATCGCGCATGGTGCGCGT
GTCCGACGTCGCGATCCGGCTCGGCTTCGCCGATCTCAGCCACTTCGAGCGCTGCTTCAAGCGGATCACCGGCTGCAGCC
CGAGGGAATACCGGATGCGATTCGCGCCGTGA

Upstream 100 bases:

>100_bases
CGTCGTGACGCGATCGGTAGGAAGCGTGTTACGGGGCCATATGATGAAGACGCAGCTTGAGTACGAGAGACCAAGGCAGA
TCATTTCGGAGACGAATGCG

Downstream 100 bases:

>100_bases
CGAGGCGCGCGCCCGGCCGGCCCCGTGCTGCGGCGCACGGCCGGTCCGCCGCTGCCGGCGGGCGCGTGCCCGGTTGCCGC
CGAGGCAAAAAAAAGCCACG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Sigma-54 Factor Interaction Region; Sigma-54 Interaction Domain Protein; Transcriptional Regulator AraC Family Protein; Sigma-54 Dependent Trancsriptional Regulator

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MLPLPTTDELESLWQESVAQGGDNGTFLSTLLANVKGWLPVSEIILTVEPGGAGSWVTPVSAAQPPLCWSASGMACGAGT
LAERAAETLVLRFAGRRLGTLQLFWLPGAGADANSSALVAELVRRLRWVVLRHTFHAANLGPMARSTLWVGAGRAIQRFT
EHLEVAVRSHFPVYIAGEFGTDPSSVAGALHVFRCGVDAPFVEIRGAHPEGSPAEWFARAKGGTLYINGIQDMDPALLCE
LPGYLPSRLGQWASSPAKGESCHLVSSGLARAEQLMEAPALPRALMAELSLVELHVPPLRARIDDLRALFSHVCQCVGHD
IELHCDDDAWQSLERRAWPENQLELTRLAAQLALSVQDRSVRLSDLAPAAAPVALLLAPAVQDAAAPADDAPAAAGEDAA
SGERADARALPRSAASWAQYVLQAEHGAGGEVEAMLPRALVRALRHLAAHYCDPLTQPDLASAACTSASHLTALFRRHLG
VNFKTLLQHMRVQRARDLLCESRMVRVSDVAIRLGFADLSHFERCFKRITGCSPREYRMRFAP

Sequences:

>Translated_543_residues
MLPLPTTDELESLWQESVAQGGDNGTFLSTLLANVKGWLPVSEIILTVEPGGAGSWVTPVSAAQPPLCWSASGMACGAGT
LAERAAETLVLRFAGRRLGTLQLFWLPGAGADANSSALVAELVRRLRWVVLRHTFHAANLGPMARSTLWVGAGRAIQRFT
EHLEVAVRSHFPVYIAGEFGTDPSSVAGALHVFRCGVDAPFVEIRGAHPEGSPAEWFARAKGGTLYINGIQDMDPALLCE
LPGYLPSRLGQWASSPAKGESCHLVSSGLARAEQLMEAPALPRALMAELSLVELHVPPLRARIDDLRALFSHVCQCVGHD
IELHCDDDAWQSLERRAWPENQLELTRLAAQLALSVQDRSVRLSDLAPAAAPVALLLAPAVQDAAAPADDAPAAAGEDAA
SGERADARALPRSAASWAQYVLQAEHGAGGEVEAMLPRALVRALRHLAAHYCDPLTQPDLASAACTSASHLTALFRRHLG
VNFKTLLQHMRVQRARDLLCESRMVRVSDVAIRLGFADLSHFERCFKRITGCSPREYRMRFAP
>Mature_543_residues
MLPLPTTDELESLWQESVAQGGDNGTFLSTLLANVKGWLPVSEIILTVEPGGAGSWVTPVSAAQPPLCWSASGMACGAGT
LAERAAETLVLRFAGRRLGTLQLFWLPGAGADANSSALVAELVRRLRWVVLRHTFHAANLGPMARSTLWVGAGRAIQRFT
EHLEVAVRSHFPVYIAGEFGTDPSSVAGALHVFRCGVDAPFVEIRGAHPEGSPAEWFARAKGGTLYINGIQDMDPALLCE
LPGYLPSRLGQWASSPAKGESCHLVSSGLARAEQLMEAPALPRALMAELSLVELHVPPLRARIDDLRALFSHVCQCVGHD
IELHCDDDAWQSLERRAWPENQLELTRLAAQLALSVQDRSVRLSDLAPAAAPVALLLAPAVQDAAAPADDAPAAAGEDAA
SGERADARALPRSAASWAQYVLQAEHGAGGEVEAMLPRALVRALRHLAAHYCDPLTQPDLASAACTSASHLTALFRRHLG
VNFKTLLQHMRVQRARDLLCESRMVRVSDVAIRLGFADLSHFERCFKRITGCSPREYRMRFAP

Specific function: Required For Sigma-54-Dependent Transcription Of The Glycerol Utilization Dha Operon (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081858, Length=244, Percent_Identity=27.0491803278689, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1790299, Length=249, Percent_Identity=28.5140562248996, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58498; Mature: 58498

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLPTTDELESLWQESVAQGGDNGTFLSTLLANVKGWLPVSEIILTVEPGGAGSWVTPV
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCC
SAAQPPLCWSASGMACGAGTLAERAAETLVLRFAGRRLGTLQLFWLPGAGADANSSALVA
CCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHH
ELVRRLRWVVLRHTFHAANLGPMARSTLWVGAGRAIQRFTEHLEVAVRSHFPVYIAGEFG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCHHHHHHHHHHHHHHHCCCCEEEEECCC
TDPSSVAGALHVFRCGVDAPFVEIRGAHPEGSPAEWFARAKGGTLYINGIQDMDPALLCE
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHH
LPGYLPSRLGQWASSPAKGESCHLVSSGLARAEQLMEAPALPRALMAELSLVELHVPPLR
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCHHH
ARIDDLRALFSHVCQCVGHDIELHCDDDAWQSLERRAWPENQLELTRLAAQLALSVQDRS
HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
VRLSDLAPAAAPVALLLAPAVQDAAAPADDAPAAAGEDAASGERADARALPRSAASWAQY
EEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHH
VLQAEHGAGGEVEAMLPRALVRALRHLAAHYCDPLTQPDLASAACTSASHLTALFRRHLG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHC
VNFKTLLQHMRVQRARDLLCESRMVRVSDVAIRLGFADLSHFERCFKRITGCSPREYRMR
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC
FAP
CCC
>Mature Secondary Structure
MLPLPTTDELESLWQESVAQGGDNGTFLSTLLANVKGWLPVSEIILTVEPGGAGSWVTPV
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCC
SAAQPPLCWSASGMACGAGTLAERAAETLVLRFAGRRLGTLQLFWLPGAGADANSSALVA
CCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHH
ELVRRLRWVVLRHTFHAANLGPMARSTLWVGAGRAIQRFTEHLEVAVRSHFPVYIAGEFG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCHHHHHHHHHHHHHHHCCCCEEEEECCC
TDPSSVAGALHVFRCGVDAPFVEIRGAHPEGSPAEWFARAKGGTLYINGIQDMDPALLCE
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHH
LPGYLPSRLGQWASSPAKGESCHLVSSGLARAEQLMEAPALPRALMAELSLVELHVPPLR
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCHHH
ARIDDLRALFSHVCQCVGHDIELHCDDDAWQSLERRAWPENQLELTRLAAQLALSVQDRS
HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
VRLSDLAPAAAPVALLLAPAVQDAAAPADDAPAAAGEDAASGERADARALPRSAASWAQY
EEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHH
VLQAEHGAGGEVEAMLPRALVRALRHLAAHYCDPLTQPDLASAACTSASHLTALFRRHLG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHC
VNFKTLLQHMRVQRARDLLCESRMVRVSDVAIRLGFADLSHFERCFKRITGCSPREYRMR
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC
FAP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA