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The map label for this gene is ycjR [C]

Identifier: 238024984

GI number: 238024984

Start: 2062749

End: 2063333

Strand: Reverse

Name: ycjR [C]

Synonym: bglu_2g16410

Alternate gene names: 238024984

Gene position: 2063333-2062749 (Counterclockwise)

Preceding gene: 238024987

Following gene: 238024983

Centisome position: 72.98

GC content: 72.65

Gene sequence:

>585_bases
ATGCTCTACTCGGCGTTCCAGACGCACGGTGTGCCGACCACCGCGGCCGGCGTGGCGATGCCGATCCCCGGCCGGGCCGC
CGAGACCGCCGCGCGCGACGGCATCCTGCTCGGCCTGGAAGCGGTCGAGCGCTACGAGTCGAAGGTGCCGAACCCTGCCT
CGCGAGGCATCGAGCTCTGCGAGCGGATCGGCCGGCCGCACTCGAAGGCTCACCTGCACACCTATCACATCAACATCGAG
GAATCCGACGTGATGACGGCGATACGCGAAACCGGCGCGCATCTCAACTATTTCCACTGCGGCGACTTCCATCGCGGCAG
TCTGGGCTCGGGCCGCATCGACCTCGCGGCGATCGTTCCCGCACTGGCGGTCTCGGGCTACGCGGGGCCGATCGCGTGCG
AGAGCTGCTCGTCGCGCGGGGGCGGGCAGCCGCTCGGGGGCGGGCTCGCGATCCGGCGCGAGCGCCGGCAAGACGCGCGC
GCGCTGGCCTCGCACGCGCGGCGCGACACCCGCGCCCGGCTCGAGTCCGTGCTCGAGTCCGCACCGGAGGCGCTCCGGCA
GGCCGAGCGCGGCCGCCTGTCATGA

Upstream 100 bases:

>100_bases
TGATGGTCTGCACGTCCCGGCGCGGCATCGCCACGTCCAAGGGCGGCCTGCCGAGCCGCGGCCCATGGCGGCCCGAGGCC
GCGCGTGCCGCGTCTGCGGT

Downstream 100 bases:

>100_bases
GCACGACGCGCGAGGTGGAGTTCGCGGTGCTGCTCGCGCAACTGCGCGAGGCGACGCCGGGCGCGCGCCGGCTGGTGGCC
GTGGCGGGGCCGCCCGGCGC

Product: xylose isomerase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MLYSAFQTHGVPTTAAGVAMPIPGRAAETAARDGILLGLEAVERYESKVPNPASRGIELCERIGRPHSKAHLHTYHINIE
ESDVMTAIRETGAHLNYFHCGDFHRGSLGSGRIDLAAIVPALAVSGYAGPIACESCSSRGGGQPLGGGLAIRRERRQDAR
ALASHARRDTRARLESVLESAPEALRQAERGRLS

Sequences:

>Translated_194_residues
MLYSAFQTHGVPTTAAGVAMPIPGRAAETAARDGILLGLEAVERYESKVPNPASRGIELCERIGRPHSKAHLHTYHINIE
ESDVMTAIRETGAHLNYFHCGDFHRGSLGSGRIDLAAIVPALAVSGYAGPIACESCSSRGGGQPLGGGLAIRRERRQDAR
ALASHARRDTRARLESVLESAPEALRQAERGRLS
>Mature_194_residues
MLYSAFQTHGVPTTAAGVAMPIPGRAAETAARDGILLGLEAVERYESKVPNPASRGIELCERIGRPHSKAHLHTYHINIE
ESDVMTAIRETGAHLNYFHCGDFHRGSLGSGRIDLAAIVPALAVSGYAGPIACESCSSRGGGQPLGGGLAIRRERRQDAR
ALASHARRDTRARLESVLESAPEALRQAERGRLS

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 20727; Mature: 20727

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYSAFQTHGVPTTAAGVAMPIPGRAAETAARDGILLGLEAVERYESKVPNPASRGIELC
CCCCCHHHCCCCCCCCCEECCCCCCHHHHHHHCCEEEHHHHHHHHHHCCCCHHHHHHHHH
ERIGRPHSKAHLHTYHINIEESDVMTAIRETGAHLNYFHCGDFHRGSLGSGRIDLAAIVP
HHHCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
ALAVSGYAGPIACESCSSRGGGQPLGGGLAIRRERRQDARALASHARRDTRARLESVLES
HHHHCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APEALRQAERGRLS
HHHHHHHHHCCCCC
>Mature Secondary Structure
MLYSAFQTHGVPTTAAGVAMPIPGRAAETAARDGILLGLEAVERYESKVPNPASRGIELC
CCCCCHHHCCCCCCCCCEECCCCCCHHHHHHHCCEEEHHHHHHHHHHCCCCHHHHHHHHH
ERIGRPHSKAHLHTYHINIEESDVMTAIRETGAHLNYFHCGDFHRGSLGSGRIDLAAIVP
HHHCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
ALAVSGYAGPIACESCSSRGGGQPLGGGLAIRRERRQDARALASHARRDTRARLESVLES
HHHHCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APEALRQAERGRLS
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA