| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024805
Identifier: 238024805
GI number: 238024805
Start: 1843238
End: 1843834
Strand: Reverse
Name: 238024805
Synonym: bglu_2g14430
Alternate gene names: NA
Gene position: 1843834-1843238 (Counterclockwise)
Preceding gene: 238024809
Following gene: 238024804
Centisome position: 65.21
GC content: 73.2
Gene sequence:
>597_bases ATGGACGATTTGTTCGATTCCCGGCCCGAGCCCGATCTCGACTGGTATCCCGACTGGCTGCCGCCCGCCGACGCCGATGC GCTGCTCGCGCGCCTGATCGCGGAAGTCGCCTGGCGGCAGGACGCGATCCGCACGCCGCGCGGCATGATCCCGCTGCCGC GCCTGACGGCCTGGCAGGGCGAGCCCGATGCCGTCTACGTCTATTCGGGCATCCGCAACGAACCGGCGCCGTGGTCCCCC GCCGTGGCCGAGTTGCGCGCGCGCGCCCAGGCCGCCTGCCGCGCGCGCTTCAACAGCGTGCTGCTGAACCGCTATCGCAC GGGCACCGACGGCATGGGCTGGCACGCCGACGACGAGCCCGAACTCGGCGCGGCGCCCGTGATCGCCTCGGTCAGCCTCG GCGCGACGCGCGTGTTCCATCTGCGGCACGAGGCAACGCGCGTCGTGCGGGCCTACCGGCTCACGCACGGCAGCCTGCTC GTGATGCGCGGCGCGACGCAGCGCGACTGGGTCCACCGCCTGGCCAAGGCGCCGGCCGTGCAGGGCGAGCGCGTCAACCT GACGTTCCGCCTCGTGATGCCGCGCCGCAAGCCATGA
Upstream 100 bases:
>100_bases TTGCGGGAAAACAGGATCGGGTGCGCTGCGCCGGCGCGGCGGCCTTGCGGCTAGGGCACCATCCCGCGATGATAGCCGGA TGTGACGATTTCTTCCGATC
Downstream 100 bases:
>100_bases CCGGCCCCCGCACCGTCGCCGCGCGCCGCGGCGCCGCCCGCCTGCCCGGGCCGGGCCATCTGACAGTTTCGACGAATCTG GCGCCGCCGTCGCCGAATCG
Product: DNA-N1-methyladenine dioxygenase
Products: NA
Alternate protein names: Alkylated DNA Repair Protein; DNA Repair System Specific For Alkylated DNA; DNA-N1-Methyladenine Dioxygenase; 2OG-Fe(II) Oxygenase Superfamily Protein; Oxidoreductase 2OG-Fe(II) Oxygenase Family; 2OG-Fe(II) Oxygenase Family Oxidoreductase; Alkylated DNA Repair Protein-Like Protein; Oxidoreductase 2OG-Fe(II) Oxygenase Family Protein; Alkylated DNA Repair Protein AlkB; CRISPR-Associated Family Protein; DNA Repair System Specific For Alkylated DNA Protein; 2OG-Fe(II) Oxygenase Family Protein; DNA Repair System Protein
Number of amino acids: Translated: 198; Mature: 198
Protein sequence:
>198_residues MDDLFDSRPEPDLDWYPDWLPPADADALLARLIAEVAWRQDAIRTPRGMIPLPRLTAWQGEPDAVYVYSGIRNEPAPWSP AVAELRARAQAACRARFNSVLLNRYRTGTDGMGWHADDEPELGAAPVIASVSLGATRVFHLRHEATRVVRAYRLTHGSLL VMRGATQRDWVHRLAKAPAVQGERVNLTFRLVMPRRKP
Sequences:
>Translated_198_residues MDDLFDSRPEPDLDWYPDWLPPADADALLARLIAEVAWRQDAIRTPRGMIPLPRLTAWQGEPDAVYVYSGIRNEPAPWSP AVAELRARAQAACRARFNSVLLNRYRTGTDGMGWHADDEPELGAAPVIASVSLGATRVFHLRHEATRVVRAYRLTHGSLL VMRGATQRDWVHRLAKAPAVQGERVNLTFRLVMPRRKP >Mature_198_residues MDDLFDSRPEPDLDWYPDWLPPADADALLARLIAEVAWRQDAIRTPRGMIPLPRLTAWQGEPDAVYVYSGIRNEPAPWSP AVAELRARAQAACRARFNSVLLNRYRTGTDGMGWHADDEPELGAAPVIASVSLGATRVFHLRHEATRVVRAYRLTHGSLL VMRGATQRDWVHRLAKAPAVQGERVNLTFRLVMPRRKP
Specific function: Unknown
COG id: COG3145
COG function: function code L; Alkylated DNA repair protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21040275, Length=189, Percent_Identity=43.3862433862434, Blast_Score=138, Evalue=4e-33, Organism=Homo sapiens, GI224451107, Length=193, Percent_Identity=35.7512953367876, Blast_Score=108, Evalue=2e-24, Organism=Homo sapiens, GI48717226, Length=193, Percent_Identity=35.7512953367876, Blast_Score=108, Evalue=2e-24, Organism=Homo sapiens, GI224451103, Length=193, Percent_Identity=35.7512953367876, Blast_Score=108, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22307; Mature: 22307
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDLFDSRPEPDLDWYPDWLPPADADALLARLIAEVAWRQDAIRTPRGMIPLPRLTAWQG CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC EPDAVYVYSGIRNEPAPWSPAVAELRARAQAACRARFNSVLLNRYRTGTDGMGWHADDEP CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC ELGAAPVIASVSLGATRVFHLRHEATRVVRAYRLTHGSLLVMRGATQRDWVHRLAKAPAV CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCC QGERVNLTFRLVMPRRKP CCCEEEEEEEEECCCCCC >Mature Secondary Structure MDDLFDSRPEPDLDWYPDWLPPADADALLARLIAEVAWRQDAIRTPRGMIPLPRLTAWQG CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC EPDAVYVYSGIRNEPAPWSPAVAELRARAQAACRARFNSVLLNRYRTGTDGMGWHADDEP CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC ELGAAPVIASVSLGATRVFHLRHEATRVVRAYRLTHGSLLVMRGATQRDWVHRLAKAPAV CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCC QGERVNLTFRLVMPRRKP CCCEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA