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The map label for this gene is ddpA [H]

Identifier: 238024755

GI number: 238024755

Start: 1785053

End: 1786672

Strand: Direct

Name: ddpA [H]

Synonym: bglu_2g13930

Alternate gene names: 238024755

Gene position: 1785053-1786672 (Clockwise)

Preceding gene: 238024753

Following gene: 238024756

Centisome position: 63.14

GC content: 69.38

Gene sequence:

>1620_bases
ATGAAGCCCTGGAGCCCCCCGCTCGCCGCCCTCGCGCGCCTCGCGGCCACCGCCTGCCTCACGCTGGCCGCGCTGGCCGC
GCTGCCCGCCGGCCGCGCGCTGGCGGCGACGCCGAAGGACGTCTTCGTGATGGCCACGCTGCTCGACGAGTTCGCGACGC
TCGACCCGGCCGAGGTCTACGAGCTGGTGCCCGAGGAATACGTGGCCAACGTCTACGACCGGCTGGTGCGCGTAAACCTC
GCCGATCCGTCGCAATTCGACGGCGACGTGGCGCAGTCGTGGCGCGTCAGCGCCGACGGCACGAGCTTCACGTTCCGCCT
GCGCGACGGCCTGACCTTCCACTCCGGCAACCCGCTCACGGCCGACGACGTGGTCTGGTCGATCCGGCGCGCGGTGCTGC
TCGACAAGGGGCCGGCCGCGGTGCTGGCCGGCATCGGCCTGACCAGGGCCAACGTCGCGCAGAACGTGATGAAGGCCGGC
GAGCACGAGGTCACGATCCGCACCGACCGCCGCTATGCCAGCACCTTCGTGCTGAACGTGCTCGGCGCCTGGCCCGCCTC
GATCGTCGACCGCAAGCTGCTGCTTGCGCACCAGCAGGGCGACGACTACGGCAACGGCTGGCTCAAGACCCACGAGGCGG
GCTCGGGCGGCTACCGGCTCGTCAAGTGGACCGCCGGCGAGAGCCTCGTGCTGCAGCGCGACGACGGCTACCGGCTGCCG
CTCGCGATGCGGCGGATCGTGCTGCGCCACGTCCCCGAGGCCGCCACCCAGCGGCTGATGCTGGAGAACGGCGACATCGA
CGCCGCACGCGACCTGAGCCCCGACGACCTGGCCGCCGTGGCCAAGAGCGGCAAGGCGAAGGTCACGGCCTCGCCGCAGG
CCACGCTGCTCTATCTCGGCCTGAATACGAAGAACCCGACGCTCGCCAGGCCCGAGGTGCAGGAAGCGCTGAAGTGGCTG
GTCGATTACGCGGGCATCCAGCAGCACGTGGTGAAGACCACCTACGCCGTCCATCAGACCTTCCTGCCCGAAGGATTCCT
TGGCACGCTGAACGCGAACCCGTACCATCTCGACGTGGCCCGGGCGAAGGCGCTGCTCGCGAAGGCCGGCGTGCCGAACG
GCTTCGCCGTGACGATGGACGTGCGCAACGATTATCCGTACACCGACATCGCGCAGGCGATCCAGGCGAATTTCGCGCTG
GCCGGCGTGAAGCTCACGCTGATCCCCGGCGACAACAAGCAGACGCTCGCGAAGTACCGCGCGCGGCAGCACGACATCTA
CATCGGCGAATGGTCGGCGGACTACATCGATCCGCACAGCAACGCGCAGGGCTTCGCCTGGAACCCGGACAACTCGGACG
GCTCCAGCTACCGGATGCTCGCGTGGCGCAATGCCTGGAACATCCCGGCGCTCACGCAGCAGACCGACGCGGCCCTGGTG
GAGCCGTCCACGGCCGAGCGCGCGAAGCGCTACCAGGCGATGCAGAAGGCGCTGCTGGCGAATTCGCCGTTCGTGATCCT
GTTCGAGAAGGTCGCGCAGGTGGCGACCGCGCCCGGCGTGAGCGGCCTCGCAATCGGCCCGATCAACGATCTCGTGTCGT
ACCGCAAGCTGCTGAAGTGA

Upstream 100 bases:

>100_bases
TAGCCGGCAGATTGTCTGCTTTAATACGGCACGCCCGTGACGGGCGTCGCCGGGCAAGGACGCTCGCCCGCCCCGCCGAC
TCGCAACCGATGGAGTGCGC

Downstream 100 bases:

>100_bases
GCCTGCGGCGAGCCGGCCGCCACCGGCCCGAGCGCCGCCGCGCCCGTTCGACCCCGTCCCGACCAGGAGACCGACGCCCC
GATGCCGTCCCCCGCTTCAT

Product: ABC transporter periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MKPWSPPLAALARLAATACLTLAALAALPAGRALAATPKDVFVMATLLDEFATLDPAEVYELVPEEYVANVYDRLVRVNL
ADPSQFDGDVAQSWRVSADGTSFTFRLRDGLTFHSGNPLTADDVVWSIRRAVLLDKGPAAVLAGIGLTRANVAQNVMKAG
EHEVTIRTDRRYASTFVLNVLGAWPASIVDRKLLLAHQQGDDYGNGWLKTHEAGSGGYRLVKWTAGESLVLQRDDGYRLP
LAMRRIVLRHVPEAATQRLMLENGDIDAARDLSPDDLAAVAKSGKAKVTASPQATLLYLGLNTKNPTLARPEVQEALKWL
VDYAGIQQHVVKTTYAVHQTFLPEGFLGTLNANPYHLDVARAKALLAKAGVPNGFAVTMDVRNDYPYTDIAQAIQANFAL
AGVKLTLIPGDNKQTLAKYRARQHDIYIGEWSADYIDPHSNAQGFAWNPDNSDGSSYRMLAWRNAWNIPALTQQTDAALV
EPSTAERAKRYQAMQKALLANSPFVILFEKVAQVATAPGVSGLAIGPINDLVSYRKLLK

Sequences:

>Translated_539_residues
MKPWSPPLAALARLAATACLTLAALAALPAGRALAATPKDVFVMATLLDEFATLDPAEVYELVPEEYVANVYDRLVRVNL
ADPSQFDGDVAQSWRVSADGTSFTFRLRDGLTFHSGNPLTADDVVWSIRRAVLLDKGPAAVLAGIGLTRANVAQNVMKAG
EHEVTIRTDRRYASTFVLNVLGAWPASIVDRKLLLAHQQGDDYGNGWLKTHEAGSGGYRLVKWTAGESLVLQRDDGYRLP
LAMRRIVLRHVPEAATQRLMLENGDIDAARDLSPDDLAAVAKSGKAKVTASPQATLLYLGLNTKNPTLARPEVQEALKWL
VDYAGIQQHVVKTTYAVHQTFLPEGFLGTLNANPYHLDVARAKALLAKAGVPNGFAVTMDVRNDYPYTDIAQAIQANFAL
AGVKLTLIPGDNKQTLAKYRARQHDIYIGEWSADYIDPHSNAQGFAWNPDNSDGSSYRMLAWRNAWNIPALTQQTDAALV
EPSTAERAKRYQAMQKALLANSPFVILFEKVAQVATAPGVSGLAIGPINDLVSYRKLLK
>Mature_539_residues
MKPWSPPLAALARLAATACLTLAALAALPAGRALAATPKDVFVMATLLDEFATLDPAEVYELVPEEYVANVYDRLVRVNL
ADPSQFDGDVAQSWRVSADGTSFTFRLRDGLTFHSGNPLTADDVVWSIRRAVLLDKGPAAVLAGIGLTRANVAQNVMKAG
EHEVTIRTDRRYASTFVLNVLGAWPASIVDRKLLLAHQQGDDYGNGWLKTHEAGSGGYRLVKWTAGESLVLQRDDGYRLP
LAMRRIVLRHVPEAATQRLMLENGDIDAARDLSPDDLAAVAKSGKAKVTASPQATLLYLGLNTKNPTLARPEVQEALKWL
VDYAGIQQHVVKTTYAVHQTFLPEGFLGTLNANPYHLDVARAKALLAKAGVPNGFAVTMDVRNDYPYTDIAQAIQANFAL
AGVKLTLIPGDNKQTLAKYRARQHDIYIGEWSADYIDPHSNAQGFAWNPDNSDGSSYRMLAWRNAWNIPALTQQTDAALV
EPSTAERAKRYQAMQKALLANSPFVILFEKVAQVATAPGVSGLAIGPINDLVSYRKLLK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=510, Percent_Identity=29.0196078431373, Blast_Score=161, Evalue=9e-41,
Organism=Escherichia coli, GI1787052, Length=535, Percent_Identity=24.6728971962617, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI1789966, Length=485, Percent_Identity=22.680412371134, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1787551, Length=544, Percent_Identity=25, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1789397, Length=543, Percent_Identity=25.0460405156538, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081878, Length=552, Percent_Identity=23.3695652173913, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58689; Mature: 58689

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPWSPPLAALARLAATACLTLAALAALPAGRALAATPKDVFVMATLLDEFATLDPAEVY
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHH
ELVPEEYVANVYDRLVRVNLADPSQFDGDVAQSWRVSADGTSFTFRLRDGLTFHSGNPLT
HHCHHHHHHHHHHHHEEEECCCCCCCCCHHHHCEEEECCCCEEEEEEECCEEEECCCCCC
ADDVVWSIRRAVLLDKGPAAVLAGIGLTRANVAQNVMKAGEHEVTIRTDRRYASTFVLNV
HHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
LGAWPASIVDRKLLLAHQQGDDYGNGWLKTHEAGSGGYRLVKWTAGESLVLQRDDGYRLP
HHCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCEEEEECCCCCCCC
LAMRRIVLRHVPEAATQRLMLENGDIDAARDLSPDDLAAVAKSGKAKVTASPQATLLYLG
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEEEE
LNTKNPTLARPEVQEALKWLVDYAGIQQHVVKTTYAVHQTFLPEGFLGTLNANPYHLDVA
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEHHH
RAKALLAKAGVPNGFAVTMDVRNDYPYTDIAQAIQANFALAGVKLTLIPGDNKQTLAKYR
HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCEEEEEEEEEEECCCCHHHHHHHH
ARQHDIYIGEWSADYIDPHSNAQGFAWNPDNSDGSSYRMLAWRNAWNIPALTQQTDAALV
HHHCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEE
EPSTAERAKRYQAMQKALLANSPFVILFEKVAQVATAPGVSGLAIGPINDLVSYRKLLK
CCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHC
>Mature Secondary Structure
MKPWSPPLAALARLAATACLTLAALAALPAGRALAATPKDVFVMATLLDEFATLDPAEVY
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHH
ELVPEEYVANVYDRLVRVNLADPSQFDGDVAQSWRVSADGTSFTFRLRDGLTFHSGNPLT
HHCHHHHHHHHHHHHEEEECCCCCCCCCHHHHCEEEECCCCEEEEEEECCEEEECCCCCC
ADDVVWSIRRAVLLDKGPAAVLAGIGLTRANVAQNVMKAGEHEVTIRTDRRYASTFVLNV
HHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
LGAWPASIVDRKLLLAHQQGDDYGNGWLKTHEAGSGGYRLVKWTAGESLVLQRDDGYRLP
HHCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCEEEEECCCCCCCC
LAMRRIVLRHVPEAATQRLMLENGDIDAARDLSPDDLAAVAKSGKAKVTASPQATLLYLG
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEEEE
LNTKNPTLARPEVQEALKWLVDYAGIQQHVVKTTYAVHQTFLPEGFLGTLNANPYHLDVA
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEHHH
RAKALLAKAGVPNGFAVTMDVRNDYPYTDIAQAIQANFALAGVKLTLIPGDNKQTLAKYR
HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCEEEEEEEEEEECCCCHHHHHHHH
ARQHDIYIGEWSADYIDPHSNAQGFAWNPDNSDGSSYRMLAWRNAWNIPALTQQTDAALV
HHHCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEE
EPSTAERAKRYQAMQKALLANSPFVILFEKVAQVATAPGVSGLAIGPINDLVSYRKLLK
CCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]