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The map label for this gene is ddpA [H]

Identifier: 238024753

GI number: 238024753

Start: 1782661

End: 1784250

Strand: Direct

Name: ddpA [H]

Synonym: bglu_2g13910

Alternate gene names: 238024753

Gene position: 1782661-1784250 (Clockwise)

Preceding gene: 238024752

Following gene: 238024755

Centisome position: 63.05

GC content: 69.18

Gene sequence:

>1590_bases
ATGAAGCGCCTGCTGTCCACGCTCGCCATCAGCGCCGCGCTCGCGGCGCTGGCGCCCGCCGCTCCCGCCGCCGCCGCGAC
GCCGGCCGGCATCTTCGTGATCGCCACGCAGATCGGCGAATTCTCGACGCTCGACCCGGCCGAGATCTACGAGCAGGTGC
CGTCCGAGTACGTCGGGAACACCTACGAGCGGCTGGTGCGCGTCGACCTGCACGACCCGACCCGGTTCGAAGGCCGGATC
GCGCAGTCGTGGAGCGTTGCCGCCGACGGCCTCACCTACACGTTCAAGCTCAAGCCCGGCCTCACGTTCCACTCCGGCAA
CCCGGTCACCGCCGACGACGTGGCCTGGTCGCTGCAGCGCACGGTGCTGCTCGGCAAGGGGCCGGCCGGCGTGCTGGCCG
ATCTCGGCCTCACCAGGGACAACGTCCGGCAGAAGGTGCGCGCCGTGAATGCCGACACCGTGACGCTGCAGACCGACCGC
AAGACCGCGCCGAGCTTCGTGCTGAACGTGCTGAGCACCGGCCCCGCCTCGATCGCCGATCGCAAGCTGCTCGACGGCCA
CGCGCGCGACGGCGACTTCGGCAATGCCTGGCTGAAGACCCACGACGCCGGCAGCGGCCCGTACCAGCTCGTCAAGTGGA
CGCCGAACGAAAGCCTCGTGCTGCAGCGCTTCGACGGCTACCCCACGCCCTATCCGATGAAGCGCGTGGTGCTGCGCCAC
GTGCCCGAGGCGTCCGCGCAGCGGCTGCTGCTGGAGAACGGCGACGCCGACGCGGCGCGCAACCTGAGCCCCGACAGCCT
CGCCGCGCTGGCCAAGGCCGGCAAGATCCAGGTCAGCACCACGCCGGTGGCGGCGCTGATGTACCTGAGCCTCAACACCA
AGAACCCGAATCTCGCCCGGCCCGAGGTGCAGCAGGCGCTGAAGTGGCTGGTGGACTACGACGGCATCCAGCGCAACATC
GTCTCGGCCACCTACAAGGTGCATCAGACCTTCCTGCCCGACCGCTTCCTCGGCGCGCTCGACCGCAATCCCTATCACCG
CGACGTCGCGAAGGCCCGCGCGCTGCTCGCCAAGGCCGGCCTCGCGAACGGCTTCGAGGTGACGATGGACATGCCGAACG
ATTACCCGTATGGGGAGATCGCGCAGGCGCTGCAGGCGAACTTCGCGCAGGCCGGCATCCGCGTGAAGCTGCTGCCCGGC
GACGCGAAGCAGGCGATCGGCAAGTATCGCGCGCGGCAGCACGACATCTTCATCGGCGAGTGGTCGCCCGACTACATGGA
CCCGAACAGCAATGCGCGCGGCTTCGCCTGGAACCCCGACAACTCCGACGCCTCGCCCACCAGGATGCTGGCCTGGCGCA
ACGCCTGGAACATTCCCGATCTGACGAAGCAGACCGACGCGGCGCTCGTCGAGCCGTCGCCGGCCAGGCGCGCGAAGCTG
TACCAGGCGCTGCAGCAGGCGGTGCTCGACCACTCGCCGTTCGTGATCATGTTCGAGAAGGTCGCGCAGGTCGCCACGCG
GCCCGGCGTGACGGGGCCGGAAATCGGCCCGATCAACGACCTGACCTCGTATCGCAGCCTGAAGAAGTGA

Upstream 100 bases:

>100_bases
CCGCCGGCGGGCCCGCTCAGCGCGACCGCGCCCGTCGTTTTTCCGCGCCGCGCGCGCCGGGATGAGAGAATCGCGACTTC
ACCGATTCGACGGAGTTCGC

Downstream 100 bases:

>100_bases
GATCGGCGGCGCGGGCGCGCCACCGCGGGCCGGCCTCGCGCTCGCCGGCCGCGCGACGCGCGCCCGGCGCTCACTCGGTG
AACACGTACTGGCCGCCCGC

Product: dipeptide ABC transporter periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MKRLLSTLAISAALAALAPAAPAAAATPAGIFVIATQIGEFSTLDPAEIYEQVPSEYVGNTYERLVRVDLHDPTRFEGRI
AQSWSVAADGLTYTFKLKPGLTFHSGNPVTADDVAWSLQRTVLLGKGPAGVLADLGLTRDNVRQKVRAVNADTVTLQTDR
KTAPSFVLNVLSTGPASIADRKLLDGHARDGDFGNAWLKTHDAGSGPYQLVKWTPNESLVLQRFDGYPTPYPMKRVVLRH
VPEASAQRLLLENGDADAARNLSPDSLAALAKAGKIQVSTTPVAALMYLSLNTKNPNLARPEVQQALKWLVDYDGIQRNI
VSATYKVHQTFLPDRFLGALDRNPYHRDVAKARALLAKAGLANGFEVTMDMPNDYPYGEIAQALQANFAQAGIRVKLLPG
DAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDASPTRMLAWRNAWNIPDLTKQTDAALVEPSPARRAKL
YQALQQAVLDHSPFVIMFEKVAQVATRPGVTGPEIGPINDLTSYRSLKK

Sequences:

>Translated_529_residues
MKRLLSTLAISAALAALAPAAPAAAATPAGIFVIATQIGEFSTLDPAEIYEQVPSEYVGNTYERLVRVDLHDPTRFEGRI
AQSWSVAADGLTYTFKLKPGLTFHSGNPVTADDVAWSLQRTVLLGKGPAGVLADLGLTRDNVRQKVRAVNADTVTLQTDR
KTAPSFVLNVLSTGPASIADRKLLDGHARDGDFGNAWLKTHDAGSGPYQLVKWTPNESLVLQRFDGYPTPYPMKRVVLRH
VPEASAQRLLLENGDADAARNLSPDSLAALAKAGKIQVSTTPVAALMYLSLNTKNPNLARPEVQQALKWLVDYDGIQRNI
VSATYKVHQTFLPDRFLGALDRNPYHRDVAKARALLAKAGLANGFEVTMDMPNDYPYGEIAQALQANFAQAGIRVKLLPG
DAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDASPTRMLAWRNAWNIPDLTKQTDAALVEPSPARRAKL
YQALQQAVLDHSPFVIMFEKVAQVATRPGVTGPEIGPINDLTSYRSLKK
>Mature_529_residues
MKRLLSTLAISAALAALAPAAPAAAATPAGIFVIATQIGEFSTLDPAEIYEQVPSEYVGNTYERLVRVDLHDPTRFEGRI
AQSWSVAADGLTYTFKLKPGLTFHSGNPVTADDVAWSLQRTVLLGKGPAGVLADLGLTRDNVRQKVRAVNADTVTLQTDR
KTAPSFVLNVLSTGPASIADRKLLDGHARDGDFGNAWLKTHDAGSGPYQLVKWTPNESLVLQRFDGYPTPYPMKRVVLRH
VPEASAQRLLLENGDADAARNLSPDSLAALAKAGKIQVSTTPVAALMYLSLNTKNPNLARPEVQQALKWLVDYDGIQRNI
VSATYKVHQTFLPDRFLGALDRNPYHRDVAKARALLAKAGLANGFEVTMDMPNDYPYGEIAQALQANFAQAGIRVKLLPG
DAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDASPTRMLAWRNAWNIPDLTKQTDAALVEPSPARRAKL
YQALQQAVLDHSPFVIMFEKVAQVATRPGVTGPEIGPINDLTSYRSLKK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=528, Percent_Identity=30.6818181818182, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1789966, Length=482, Percent_Identity=25.103734439834, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1787052, Length=515, Percent_Identity=24.4660194174757, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787551, Length=561, Percent_Identity=25.1336898395722, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57724; Mature: 57724

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLSTLAISAALAALAPAAPAAAATPAGIFVIATQIGEFSTLDPAEIYEQVPSEYVGN
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHCC
TYERLVRVDLHDPTRFEGRIAQSWSVAADGLTYTFKLKPGLTFHSGNPVTADDVAWSLQR
HHHHEEEEECCCCCCCCCCHHCCCEEEECCEEEEEEECCCEEEECCCCCCHHHHHHHHHH
TVLLGKGPAGVLADLGLTRDNVRQKVRAVNADTVTLQTDRKTAPSFVLNVLSTGPASIAD
EEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHH
RKLLDGHARDGDFGNAWLKTHDAGSGPYQLVKWTPNESLVLQRFDGYPTPYPMKRVVLRH
HHHHCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHH
VPEASAQRLLLENGDADAARNLSPDSLAALAKAGKIQVSTTPVAALMYLSLNTKNPNLAR
CCCHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCEEEEECCCEEEEEEEEEECCCCCCCC
PEVQQALKWLVDYDGIQRNIVSATYKVHQTFLPDRFLGALDRNPYHRDVAKARALLAKAG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
LANGFEVTMDMPNDYPYGEIAQALQANFAQAGIRVKLLPGDAKQAIGKYRARQHDIFIGE
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCEEEEC
WSPDYMDPNSNARGFAWNPDNSDASPTRMLAWRNAWNIPDLTKQTDAALVEPSPARRAKL
CCCCCCCCCCCCCCEEECCCCCCCCCHHEEEECCCCCCCCCCCCCCCEEECCCHHHHHHH
YQALQQAVLDHSPFVIMFEKVAQVATRPGVTGPEIGPINDLTSYRSLKK
HHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKRLLSTLAISAALAALAPAAPAAAATPAGIFVIATQIGEFSTLDPAEIYEQVPSEYVGN
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHCC
TYERLVRVDLHDPTRFEGRIAQSWSVAADGLTYTFKLKPGLTFHSGNPVTADDVAWSLQR
HHHHEEEEECCCCCCCCCCHHCCCEEEECCEEEEEEECCCEEEECCCCCCHHHHHHHHHH
TVLLGKGPAGVLADLGLTRDNVRQKVRAVNADTVTLQTDRKTAPSFVLNVLSTGPASIAD
EEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHH
RKLLDGHARDGDFGNAWLKTHDAGSGPYQLVKWTPNESLVLQRFDGYPTPYPMKRVVLRH
HHHHCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHH
VPEASAQRLLLENGDADAARNLSPDSLAALAKAGKIQVSTTPVAALMYLSLNTKNPNLAR
CCCHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCEEEEECCCEEEEEEEEEECCCCCCCC
PEVQQALKWLVDYDGIQRNIVSATYKVHQTFLPDRFLGALDRNPYHRDVAKARALLAKAG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
LANGFEVTMDMPNDYPYGEIAQALQANFAQAGIRVKLLPGDAKQAIGKYRARQHDIFIGE
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCEEEEC
WSPDYMDPNSNARGFAWNPDNSDASPTRMLAWRNAWNIPDLTKQTDAALVEPSPARRAKL
CCCCCCCCCCCCCCEEECCCCCCCCCHHEEEECCCCCCCCCCCCCCCEEECCCHHHHHHH
YQALQQAVLDHSPFVIMFEKVAQVATRPGVTGPEIGPINDLTSYRSLKK
HHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]