Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is pvdQ [H]
Identifier: 238024669
GI number: 238024669
Start: 1671841
End: 1674333
Strand: Direct
Name: pvdQ [H]
Synonym: bglu_2g12920
Alternate gene names: 238024669
Gene position: 1671841-1674333 (Clockwise)
Preceding gene: 238024668
Following gene: 238024670
Centisome position: 59.13
GC content: 74.97
Gene sequence:
>2493_bases ATGCCGCCCTCGCACGCCGCGCCGCCGCCAGCACACCTGCCCGAGCATCCGTCGTTTGCCGCCGTGCCGGCCTACGCGCC GGTGGAAATCGTGGTGGAGATCGCGCGTAGCGCCGACGGCACGCCGCATATCCGCGCGCACGACTTCGAGTCACTCGGCT ACGGCCACGGCTACGTGGTGGCCGACGATCACGCGGCCGTGCTGCTCGCGCACCTCGTCACGCTGCTGGGCGAGCGCAGC CGCCACTATGGCCGCGACGAAGCGCCCGGCGACGACGCCAACCTCGACAGCGACCTCGGCTACCGCGCGCTCGACTACGG CGGCCAGGCCGCCGGCGCGCTGGCGAGGATGTCACGCCACGCCAACGCGCTGATCGACGGCTTCGCGGCCGGCTTCAACC GTCGCGTGAGCGAGCTCGTCGAGGCCGGCGAGCCGTTCGCGTCGATGCCTGGCGGCACGCCGCGCGTGCTGCAGCGCAAC GACGTCGCCGCGCTGCTGCTCGCGCTGGCCGACGAGGCGAGCGGCCGGCGCTTCGTGCAGGCCCTTGCGCTGGCGCGGCC ACCGGTGCCGACCGCGGCGCCCGACGCGCATGGCGAGGTCGCGGCGGGCGCCGACCACGCGGCTCGCGCCGACGACGCCC GCCGCGCCGACCCGCCATGGTCGGCCCACGCCGATCTGCCGCTCGGCAGCAACGCCTGGGCAATCGGCGGCGAGGCGGCG GCCGGCGGTGCGAGCGTGCTGATCGCCAATCCGCACTTCAGCTTCAACGACGGCTTGCGCCTCTACCAAGTGCATCTGAC GATCCCCGGCGCGTTCGACGTGGCCGGCGTGTCGATCCTCGGCTGCCCGACCGTCAATCTCGGCTTCAACGCGTCGCTGG CCTGGACCCACACGGTGTCGTCGGCCGAGCGATTCGTGCTGCAGCGGCTGCAGCTCGTGCCGAACGACCCGACCGCCTAC TTCTGGGACGGCCGGCCCGAGCCGATGCAACGGCGCCGCGTCGCGATCGAGATCCGCGGCGAGGCACGGCCCCACGAGCG CGACCTCTGGCAGACGCGCCACGGCCCGCCGCTCAGCGTGCCGGGCCTCGCCGAATGGAATCCCGAATGGGTGTTCTGCC TCGGCAACGCGAACGCCGGCAACGCCGACGTGCTCGACCACTGGCTCGCGATCGGCGCCGCGCGCTCGCTCGACGAGTTG GAGCAGAGCTTCGCGCGCTGGGCGGGAACGAGCTGGGTGAATCTGCTCGCGATCGACGCCGCCGGGCAGGCCTGCTACGT CGACGGCAGCAACGTGCCCGAACTTGGCGCGGCGACGCTCGCGGCACTGGCGGACACCGACCATCCGCTCGCGCTCGAAC GCAGACGCCGCGGCCTCGTCGTGCTGCCCGGCGACGACCCACGCCACGCGCTCGCGCCGCGCCGCCCGCGTGCCGTCGCG CAGCGCCCGGCGCGCCGCACGCGCGGCGTGCTCGCCAACTTCAACAACCCGTACCAGCACGTCGATCTCGACGCCGCGCT GCCCGCGCACCATCCGCTGTTCGGCGCGTTCGACGCGCCGCTCACGCCGCGCGCGCGGCACGGCCTGCGGCTCACGCGCG AACTCGCGCGGCCGATCGGGGCCACCGCGCTCGCGCGCCTGACGCTCGACAACCACGTGCCGATGAGCGACCTGCTGCTC GACGACCTGCTCGCGCTCGGTGCGGCCTGTCGCGAGCCGGTGGCCGCGCGCGACGGCACACGGGTCGATCTCGCGCCCGC GCTCGCGATCCTGCGCGCGTGGCGTCGCGAGGACGCGCTCGACGCGCCGGGCGCGCCGCTGTTTCGCGAATTCGCGCAGG CGTGGCTCGCGGGCGCGCATGGCTACGCGCACGCCTTCGATCCCGCCGCGCCACTCGACACGCCGCGCGGCCTGCCGCAC TGGCAGGGCAGCGGCCCGGCGCCGGCGCTCGTCGCGCTAGCCACGGCCGTCGAGCAGCTCGCGGCGGCTGGCTTTCCGCC CAGCGCCACGCTGCGCGACCTCCAGTTCCGGCTGCGCGCCGACGGCACGCGCGCACCGTTGGACGGCGGCCCGAACCTGA CCGGCGCGCTCAACGTCAGCCAGGTCGGCGCACTCACACCGCCCGAGCGGCTCGCCCAGCTCGTGCGCGGGCGCGTGCCG CTGCCCACCGGCCTCGCGCCGCACGGCTATGCCGTGAACTTCGGCACCACCTGGCTCGCCAGCATCGTGTTCGACGGTGG CCGCCCGCTCGTGCATAGCGTGCTGCCGCAGGCGCAGCGCAGCCGGCCCGGCACCGCGTGGAGCGACGGCCGGCCGCCGC CGCCGCTCGGCACGCCGGCCAGCCACTTCGCGTTCGAGGCTGCGCAGGTGCAGGCCGCCACGGTCACGCGATGCGAATTA CGCGCAAGTGCCGCATCGGTTACCTTCGCCGCCAGCGCGGCCGACGCCTCCCGTCATACCCCGCTCGCCCACCCCGTCCG CCCTCGCCCATGA
Upstream 100 bases:
>100_bases ACGCGATCGCGCAGGAACGCGTGGACGCGTTCGTCGCCAACCACAGCGCGCACGCGCTGAAGCTAGCCTGACGCCGCCGC CCATGCCGTCGATCCCGTCC
Downstream 100 bases:
>100_bases ACGATTTCTTCTCGATGTACCGCCACGGCTTCCTGCGGGTGGCCGTCGCCATTCCCCCCGTGGTGGTCGCCGATCCGGCC GCCAACCTCCAGGCGACGCT
Product: Aculeacin A acylase
Products: NA
Alternate protein names: AHL acylase pvdQ; Acyl-HSL acylase pvdQ; Acyl-HSL acylase pvdQ subunit alpha; Acyl-HSL acylase pvdQ subunit beta [H]
Number of amino acids: Translated: 830; Mature: 829
Protein sequence:
>830_residues MPPSHAAPPPAHLPEHPSFAAVPAYAPVEIVVEIARSADGTPHIRAHDFESLGYGHGYVVADDHAAVLLAHLVTLLGERS RHYGRDEAPGDDANLDSDLGYRALDYGGQAAGALARMSRHANALIDGFAAGFNRRVSELVEAGEPFASMPGGTPRVLQRN DVAALLLALADEASGRRFVQALALARPPVPTAAPDAHGEVAAGADHAARADDARRADPPWSAHADLPLGSNAWAIGGEAA AGGASVLIANPHFSFNDGLRLYQVHLTIPGAFDVAGVSILGCPTVNLGFNASLAWTHTVSSAERFVLQRLQLVPNDPTAY FWDGRPEPMQRRRVAIEIRGEARPHERDLWQTRHGPPLSVPGLAEWNPEWVFCLGNANAGNADVLDHWLAIGAARSLDEL EQSFARWAGTSWVNLLAIDAAGQACYVDGSNVPELGAATLAALADTDHPLALERRRRGLVVLPGDDPRHALAPRRPRAVA QRPARRTRGVLANFNNPYQHVDLDAALPAHHPLFGAFDAPLTPRARHGLRLTRELARPIGATALARLTLDNHVPMSDLLL DDLLALGAACREPVAARDGTRVDLAPALAILRAWRREDALDAPGAPLFREFAQAWLAGAHGYAHAFDPAAPLDTPRGLPH WQGSGPAPALVALATAVEQLAAAGFPPSATLRDLQFRLRADGTRAPLDGGPNLTGALNVSQVGALTPPERLAQLVRGRVP LPTGLAPHGYAVNFGTTWLASIVFDGGRPLVHSVLPQAQRSRPGTAWSDGRPPPPLGTPASHFAFEAAQVQAATVTRCEL RASAASVTFAASAADASRHTPLAHPVRPRP
Sequences:
>Translated_830_residues MPPSHAAPPPAHLPEHPSFAAVPAYAPVEIVVEIARSADGTPHIRAHDFESLGYGHGYVVADDHAAVLLAHLVTLLGERS RHYGRDEAPGDDANLDSDLGYRALDYGGQAAGALARMSRHANALIDGFAAGFNRRVSELVEAGEPFASMPGGTPRVLQRN DVAALLLALADEASGRRFVQALALARPPVPTAAPDAHGEVAAGADHAARADDARRADPPWSAHADLPLGSNAWAIGGEAA AGGASVLIANPHFSFNDGLRLYQVHLTIPGAFDVAGVSILGCPTVNLGFNASLAWTHTVSSAERFVLQRLQLVPNDPTAY FWDGRPEPMQRRRVAIEIRGEARPHERDLWQTRHGPPLSVPGLAEWNPEWVFCLGNANAGNADVLDHWLAIGAARSLDEL EQSFARWAGTSWVNLLAIDAAGQACYVDGSNVPELGAATLAALADTDHPLALERRRRGLVVLPGDDPRHALAPRRPRAVA QRPARRTRGVLANFNNPYQHVDLDAALPAHHPLFGAFDAPLTPRARHGLRLTRELARPIGATALARLTLDNHVPMSDLLL DDLLALGAACREPVAARDGTRVDLAPALAILRAWRREDALDAPGAPLFREFAQAWLAGAHGYAHAFDPAAPLDTPRGLPH WQGSGPAPALVALATAVEQLAAAGFPPSATLRDLQFRLRADGTRAPLDGGPNLTGALNVSQVGALTPPERLAQLVRGRVP LPTGLAPHGYAVNFGTTWLASIVFDGGRPLVHSVLPQAQRSRPGTAWSDGRPPPPLGTPASHFAFEAAQVQAATVTRCEL RASAASVTFAASAADASRHTPLAHPVRPRP >Mature_829_residues PPSHAAPPPAHLPEHPSFAAVPAYAPVEIVVEIARSADGTPHIRAHDFESLGYGHGYVVADDHAAVLLAHLVTLLGERSR HYGRDEAPGDDANLDSDLGYRALDYGGQAAGALARMSRHANALIDGFAAGFNRRVSELVEAGEPFASMPGGTPRVLQRND VAALLLALADEASGRRFVQALALARPPVPTAAPDAHGEVAAGADHAARADDARRADPPWSAHADLPLGSNAWAIGGEAAA GGASVLIANPHFSFNDGLRLYQVHLTIPGAFDVAGVSILGCPTVNLGFNASLAWTHTVSSAERFVLQRLQLVPNDPTAYF WDGRPEPMQRRRVAIEIRGEARPHERDLWQTRHGPPLSVPGLAEWNPEWVFCLGNANAGNADVLDHWLAIGAARSLDELE QSFARWAGTSWVNLLAIDAAGQACYVDGSNVPELGAATLAALADTDHPLALERRRRGLVVLPGDDPRHALAPRRPRAVAQ RPARRTRGVLANFNNPYQHVDLDAALPAHHPLFGAFDAPLTPRARHGLRLTRELARPIGATALARLTLDNHVPMSDLLLD DLLALGAACREPVAARDGTRVDLAPALAILRAWRREDALDAPGAPLFREFAQAWLAGAHGYAHAFDPAAPLDTPRGLPHW QGSGPAPALVALATAVEQLAAAGFPPSATLRDLQFRLRADGTRAPLDGGPNLTGALNVSQVGALTPPERLAQLVRGRVPL PTGLAPHGYAVNFGTTWLASIVFDGGRPLVHSVLPQAQRSRPGTAWSDGRPPPPLGTPASHFAFEAAQVQAATVTRCELR ASAASVTFAASAADASRHTPLAHPVRPRP
Specific function: Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length) [H
COG id: COG2366
COG function: function code R; Protein related to penicillin acylase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S45 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002692 [H]
Pfam domain/function: PF01804 Penicil_amidase [H]
EC number: =3.5.1.97 [H]
Molecular weight: Translated: 87901; Mature: 87770
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPSHAAPPPAHLPEHPSFAAVPAYAPVEIVVEIARSADGTPHIRAHDFESLGYGHGYVV CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCHHHCCCCCCEEE ADDHAAVLLAHLVTLLGERSRHYGRDEAPGDDANLDSDLGYRALDYGGQAAGALARMSRH ECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH ANALIDGFAAGFNRRVSELVEAGEPFASMPGGTPRVLQRNDVAALLLALADEASGRRFVQ HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHEECCHHHHHHHHHHCCCCHHHHHH ALALARPPVPTAAPDAHGEVAAGADHAARADDARRADPPWSAHADLPLGSNAWAIGGEAA HHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC AGGASVLIANPHFSFNDGLRLYQVHLTIPGAFDVAGVSILGCPTVNLGFNASLAWTHTVS CCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEHHHH SAERFVLQRLQLVPNDPTAYFWDGRPEPMQRRRVAIEIRGEARPHERDLWQTRHGPPLSV HHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCEEEEEEECCCCCCHHHHHHCCCCCCCCC PGLAEWNPEWVFCLGNANAGNADVLDHWLAIGAARSLDELEQSFARWAGTSWVNLLAIDA CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC AGQACYVDGSNVPELGAATLAALADTDHPLALERRRRGLVVLPGDDPRHALAPRRPRAVA CCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCHHHH QRPARRTRGVLANFNNPYQHVDLDAALPAHHPLFGAFDAPLTPRARHGLRLTRELARPIG HCHHHHHCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC ATALARLTLDNHVPMSDLLLDDLLALGAACREPVAARDGTRVDLAPALAILRAWRREDAL HHHHHEEHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHCCCC DAPGAPLFREFAQAWLAGAHGYAHAFDPAAPLDTPRGLPHWQGSGPAPALVALATAVEQL CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AAAGFPPSATLRDLQFRLRADGTRAPLDGGPNLTGALNVSQVGALTPPERLAQLVRGRVP HHCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCEEEECHHHCCCCCCHHHHHHHHHCCCC LPTGLAPHGYAVNFGTTWLASIVFDGGRPLVHSVLPQAQRSRPGTAWSDGRPPPPLGTPA CCCCCCCCCEEEECHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCH SHFAFEAAQVQAATVTRCELRASAASVTFAASAADASRHTPLAHPVRPRP HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PPSHAAPPPAHLPEHPSFAAVPAYAPVEIVVEIARSADGTPHIRAHDFESLGYGHGYVV CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCHHHCCCCCCEEE ADDHAAVLLAHLVTLLGERSRHYGRDEAPGDDANLDSDLGYRALDYGGQAAGALARMSRH ECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH ANALIDGFAAGFNRRVSELVEAGEPFASMPGGTPRVLQRNDVAALLLALADEASGRRFVQ HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHEECCHHHHHHHHHHCCCCHHHHHH ALALARPPVPTAAPDAHGEVAAGADHAARADDARRADPPWSAHADLPLGSNAWAIGGEAA HHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC AGGASVLIANPHFSFNDGLRLYQVHLTIPGAFDVAGVSILGCPTVNLGFNASLAWTHTVS CCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEHHHH SAERFVLQRLQLVPNDPTAYFWDGRPEPMQRRRVAIEIRGEARPHERDLWQTRHGPPLSV HHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCEEEEEEECCCCCCHHHHHHCCCCCCCCC PGLAEWNPEWVFCLGNANAGNADVLDHWLAIGAARSLDELEQSFARWAGTSWVNLLAIDA CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC AGQACYVDGSNVPELGAATLAALADTDHPLALERRRRGLVVLPGDDPRHALAPRRPRAVA CCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCHHHH QRPARRTRGVLANFNNPYQHVDLDAALPAHHPLFGAFDAPLTPRARHGLRLTRELARPIG HCHHHHHCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC ATALARLTLDNHVPMSDLLLDDLLALGAACREPVAARDGTRVDLAPALAILRAWRREDAL HHHHHEEHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHCCCC DAPGAPLFREFAQAWLAGAHGYAHAFDPAAPLDTPRGLPHWQGSGPAPALVALATAVEQL CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AAAGFPPSATLRDLQFRLRADGTRAPLDGGPNLTGALNVSQVGALTPPERLAQLVRGRVP HHCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCEEEECHHHCCCCCCHHHHHHHHHCCCC LPTGLAPHGYAVNFGTTWLASIVFDGGRPLVHSVLPQAQRSRPGTAWSDGRPPPPLGTPA CCCCCCCCCEEEECHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCH SHFAFEAAQVQAATVTRCELRASAASVTFAASAADASRHTPLAHPVRPRP HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA