Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238024647
Identifier: 238024647
GI number: 238024647
Start: 1623937
End: 1625391
Strand: Direct
Name: 238024647
Synonym: bglu_2g12620
Alternate gene names: NA
Gene position: 1623937-1625391 (Clockwise)
Preceding gene: 238024646
Following gene: 238024648
Centisome position: 57.44
GC content: 74.09
Gene sequence:
>1455_bases ATGACGCAAACGCAACGGGCCGACGACGCGGCGCAGCAGGTCCGCATCGACGGCCAGCAGCTCGCGGTGCTCTGGCAGCT CTCGACGCGTGCGCGGGCCGCCGCGAGCGAGGCCACGCTCGGCTTCACGATCGTCAACGAGACGCTCGCGCTGGTGCCCT ACCGGCAGGCTGCCTGGTGGCGCGGCGACACGCCGGGCCACGTCGCGGCCGTCTCCGGCCTGCCGCAGAGCGACCCCAAC GCCCCCTACGTGCAGTGGCTCGCCGCGCTCTGCAAGGCGCTCGCGCAAGGCCTGCGCGGCACGCCGCCGAAGGACGCGGC GGCCCACGTGGAAGGCCACGGCGCACCGGTGCTGCCGGCGCGGCCGAAGGTGCAGACCTTCACCGCCGCCGACCTCGAGG CCGAAGCGCCCCACGTGGCCGCCGAATGGGAGGCCTGGTGGCCCGCGCACGGCGCGTGGCTACCCTTGACCGACCGCGCC GGCCGCCCGGTGGGCGGCGTCGTGTTCGCGCGCGACACCGCCTGGAGCGCCACCGACACCGCGCTCTTGACCGAGCTCGG CCAGGTCTGGGCGCATGCGTTCGAGGCGTTCTCGCCGCGCGCGAGCTGGCTCGAACGCGCGCGCGCCGTGCTGAGGCCCG GCCGCCAGCAGCGCCGCGTGCTGATCGGGGTGGCCGTGGCCTGCGTGATCCCGATACGGCTGACCGTGCTCGCGCCGGCC GAGGTCACGCCGAAAGACCCGTTCGTGGTGCGCTCGCCGCTCGACGGCGTGATCGACCGGCTCTACGTGAAGCCGAACCA GGTGGTGCAGGCCGGCACGCCGCTGCTCGGCCTCGACGCCACCACGCTGCAGTCGCGCTACGCGGTGGCCCGCAAGGACT ACGACACCGCGCAGGAGGAATTCCGCCAGACCGAGCAGCTCGCCGTCACCGACGACCGCACGCGCCTGGACATGGCCGAG CGGCGCGGCAAGCTCGACCAGAGCCGCGTCGAGCTCGACTACACGGCGCGCCAGCTCGCGCGCGTGAGCGTGAATGCCGC GCGCTCGGGGGTGGCCGTGTTCAGCGATCCGAACGAATGGACCGGCAAGGCGGTGGCCGTCGGCGAGAAGATCCTGGTGC TGGCCGACCCGGCCCACGTCGAGGTGACCGCCTGGCTGCCGGTGGCCGACAACATCGACGTGCAGCCCGGCACGGCGCTC ACGCTCTATCCGAAGAGCTCGCCGCTCACCAGCTACGACGCGCGCATCGATTCGATCGCCTGGCGTGCCGAGCCCACCCC CGAGGGCGTGCTCGCCTACCGGGTGCGCGCCAGCTTCGACGCCGGCGACCCGGGAGCCCGGCAGGCGCCGCTCGGCGCGA TGGGCACCGCGCGCATCCGCGGCCCGTGGGTGCCGGCGATCTATTACGTGCTGCGCCGCCCGCTGACGCTCGCGCGTCAA TGGCTCGGCTGGTGA
Upstream 100 bases:
>100_bases CCGGTCACGCAGACCGTGGACGTGACGGCAGCACTGAACGGCGGTGCCCCGGAGCTGCTGCCGGGCATGAGCGGCTGGGC GACCTTCGCGCGGTGATGCG
Downstream 100 bases:
>100_bases CGCCACGCTTGCCGCCATGCCAAGACTTCCGCAACTTCGCCAGGAGCTGACGCTCTCGCCCGGCGCGGCCACGCCCGACG GCGCACCGACCTGGATGCTG
Product: HlyD family secretion protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MTQTQRADDAAQQVRIDGQQLAVLWQLSTRARAAASEATLGFTIVNETLALVPYRQAAWWRGDTPGHVAAVSGLPQSDPN APYVQWLAALCKALAQGLRGTPPKDAAAHVEGHGAPVLPARPKVQTFTAADLEAEAPHVAAEWEAWWPAHGAWLPLTDRA GRPVGGVVFARDTAWSATDTALLTELGQVWAHAFEAFSPRASWLERARAVLRPGRQQRRVLIGVAVACVIPIRLTVLAPA EVTPKDPFVVRSPLDGVIDRLYVKPNQVVQAGTPLLGLDATTLQSRYAVARKDYDTAQEEFRQTEQLAVTDDRTRLDMAE RRGKLDQSRVELDYTARQLARVSVNAARSGVAVFSDPNEWTGKAVAVGEKILVLADPAHVEVTAWLPVADNIDVQPGTAL TLYPKSSPLTSYDARIDSIAWRAEPTPEGVLAYRVRASFDAGDPGARQAPLGAMGTARIRGPWVPAIYYVLRRPLTLARQ WLGW
Sequences:
>Translated_484_residues MTQTQRADDAAQQVRIDGQQLAVLWQLSTRARAAASEATLGFTIVNETLALVPYRQAAWWRGDTPGHVAAVSGLPQSDPN APYVQWLAALCKALAQGLRGTPPKDAAAHVEGHGAPVLPARPKVQTFTAADLEAEAPHVAAEWEAWWPAHGAWLPLTDRA GRPVGGVVFARDTAWSATDTALLTELGQVWAHAFEAFSPRASWLERARAVLRPGRQQRRVLIGVAVACVIPIRLTVLAPA EVTPKDPFVVRSPLDGVIDRLYVKPNQVVQAGTPLLGLDATTLQSRYAVARKDYDTAQEEFRQTEQLAVTDDRTRLDMAE RRGKLDQSRVELDYTARQLARVSVNAARSGVAVFSDPNEWTGKAVAVGEKILVLADPAHVEVTAWLPVADNIDVQPGTAL TLYPKSSPLTSYDARIDSIAWRAEPTPEGVLAYRVRASFDAGDPGARQAPLGAMGTARIRGPWVPAIYYVLRRPLTLARQ WLGW >Mature_483_residues TQTQRADDAAQQVRIDGQQLAVLWQLSTRARAAASEATLGFTIVNETLALVPYRQAAWWRGDTPGHVAAVSGLPQSDPNA PYVQWLAALCKALAQGLRGTPPKDAAAHVEGHGAPVLPARPKVQTFTAADLEAEAPHVAAEWEAWWPAHGAWLPLTDRAG RPVGGVVFARDTAWSATDTALLTELGQVWAHAFEAFSPRASWLERARAVLRPGRQQRRVLIGVAVACVIPIRLTVLAPAE VTPKDPFVVRSPLDGVIDRLYVKPNQVVQAGTPLLGLDATTLQSRYAVARKDYDTAQEEFRQTEQLAVTDDRTRLDMAER RGKLDQSRVELDYTARQLARVSVNAARSGVAVFSDPNEWTGKAVAVGEKILVLADPAHVEVTAWLPVADNIDVQPGTALT LYPKSSPLTSYDARIDSIAWRAEPTPEGVLAYRVRASFDAGDPGARQAPLGAMGTARIRGPWVPAIYYVLRRPLTLARQW LGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52677; Mature: 52546
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTQRADDAAQQVRIDGQQLAVLWQLSTRARAAASEATLGFTIVNETLALVPYRQAAWW CCCCCCCHHHHHHHCCCCCEEEEEEEEHHHHHHHHCCCEEEEEEECCHHHEEECHHHHCC RGDTPGHVAAVSGLPQSDPNAPYVQWLAALCKALAQGLRGTPPKDAAAHVEGHGAPVLPA CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCC RPKVQTFTAADLEAEAPHVAAEWEAWWPAHGAWLPLTDRAGRPVGGVVFARDTAWSATDT CCCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCHHH ALLTELGQVWAHAFEAFSPRASWLERARAVLRPGRQQRRVLIGVAVACVIPIRLTVLAPA HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEECC EVTPKDPFVVRSPLDGVIDRLYVKPNQVVQAGTPLLGLDATTLQSRYAVARKDYDTAQEE CCCCCCCEEEECCHHHHHHHHCCCCCHHHHCCCCEEECCHHHHHHHHHHHHCCCHHHHHH FRQTEQLAVTDDRTRLDMAERRGKLDQSRVELDYTARQLARVSVNAARSGVAVFSDPNEW HHHHHHEEECCCHHHHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHHHCCEEEECCCCCC TGKAVAVGEKILVLADPAHVEVTAWLPVADNIDVQPGTALTLYPKSSPLTSYDARIDSIA CCCEEEECCEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHEE WRAEPTPEGVLAYRVRASFDAGDPGARQAPLGAMGTARIRGPWVPAIYYVLRRPLTLARQ EECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHH WLGW HHCC >Mature Secondary Structure TQTQRADDAAQQVRIDGQQLAVLWQLSTRARAAASEATLGFTIVNETLALVPYRQAAWW CCCCCCHHHHHHHCCCCCEEEEEEEEHHHHHHHHCCCEEEEEEECCHHHEEECHHHHCC RGDTPGHVAAVSGLPQSDPNAPYVQWLAALCKALAQGLRGTPPKDAAAHVEGHGAPVLPA CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCC RPKVQTFTAADLEAEAPHVAAEWEAWWPAHGAWLPLTDRAGRPVGGVVFARDTAWSATDT CCCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCHHH ALLTELGQVWAHAFEAFSPRASWLERARAVLRPGRQQRRVLIGVAVACVIPIRLTVLAPA HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEECC EVTPKDPFVVRSPLDGVIDRLYVKPNQVVQAGTPLLGLDATTLQSRYAVARKDYDTAQEE CCCCCCCEEEECCHHHHHHHHCCCCCHHHHCCCCEEECCHHHHHHHHHHHHCCCHHHHHH FRQTEQLAVTDDRTRLDMAERRGKLDQSRVELDYTARQLARVSVNAARSGVAVFSDPNEW HHHHHHEEECCCHHHHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHHHCCEEEECCCCCC TGKAVAVGEKILVLADPAHVEVTAWLPVADNIDVQPGTALTLYPKSSPLTSYDARIDSIA CCCEEEECCEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHEE WRAEPTPEGVLAYRVRASFDAGDPGARQAPLGAMGTARIRGPWVPAIYYVLRRPLTLARQ EECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHH WLGW HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA