Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is plcN [H]
Identifier: 238024639
GI number: 238024639
Start: 1607698
End: 1609425
Strand: Direct
Name: plcN [H]
Synonym: bglu_2g12540
Alternate gene names: 238024639
Gene position: 1607698-1609425 (Clockwise)
Preceding gene: 238024634
Following gene: 238024640
Centisome position: 56.86
GC content: 66.38
Gene sequence:
>1728_bases ATGCTGCTTCGTCGAACCTTGATTGCCACTGCCTGCGTCGCGTCTGCGATCACGCTGTACGCCTGCGGCGGCAATGATGA TAGTTCCGCGTCCAACTCGACCACGCCTTCGTCCTCGCCGAGCTCGACGGTCTCGGCTCAGGACGCTCTGCAGACCAAGA CGCCGATCAAGCATCTGGTCGTGATCTACGGCGAGAACGTCTCGTTCGACCACTATTTCGGTACGTATCCCAACGCCGCC AATCTGGCCGGCGAACCGGCCTTCACGCCGGCCGCGAACACGCAGACCGACATCGACAACCTCGGCCCGGCCACCAGCGC GCTGCGCACCGCGAACGGCAACCAGACGAACCCGGCCAACGGCTCGGACGCCTCGGGCCCGTTCCGCCTGGACCGCACGC AGGCCGCATCGGCCGATCAGAACCACGCCTACACTGCCGAACAGCAGGCCTACGACAACGGCGCGGCCGACCTGTTCCCG CTCTACACCGGCAGGGCCACGCCGGGCGGCGTGGGCGGCTTCGGCACGAAGGGCCAGGTGATGGGCTATTACGACGGCAA CACCGTCACGGCCCTGTGGAACTACGCATCGCATTACGCGATGAGCGACAACGCGTTCTCCGACACCTATGGCCCGTCGA CGCCGGGCGCGCTCGAGCTGGTGTCGGGCAACACCAACGGCATGCAGATCGTGAAGACCTCGAAGGCCTCCTCGACCAAG CTGGCCACCTCGTACTACGTCAACGACGGCCAGAGCGGCTACACGATGATCAACGACGTGGACCCGGGCTATGACGTCTG CTCGAGCACGACGGACCAGGCGATGATGCAGGGCAAGAACATCGGCGACCTGCTGAACGCGCAGAAGATCACCTGGGGCG GCTTCATGGGCGGCTTCAACCTGTCGACCAAGAATGCCGACGGCTCGACGGGCTGCGCGCGCAAGACGATGGCCACGGCC GTCGGCGCCGCGACCAACGACTACATCCCCCACCACAACTGGTTCCAGTACTTCGCTTCGACGGCGAACCCGAACCACAC GCGTCCGAGCTCGATCGCGGCGATCGGCTCGAGCCTGGAAACCGACGGCAAGACGGCCGAGCCGGCCAACCACCAGTACG ATTCGGACGACTTCTTCGCGGCGGTCCAGGCCGGCAACTTCCCGTCGGTATCGTTCCTGAAGGCCCCGGCCGCCCAGGAC GCGCACGCCGGCTACTCGGACCCGCTCGACGAGCAGCTGTTCGTCACGAAGGTCGTGAACTTCCTGATGCAGCAGCCGGA CTGGAAGAACACCGCCGTGGTCGTCACCTATGACGACTCGGACGGCTGGTACGACCACAAGTACGTCACGCCGACGCACG CTTCGTTCGACGCGGTCGATCAGCTGAACGGCGACGGCGTCTGCGGCACGGGCTCGGCCTCGGTGCCGCTCGGCGTCACG GGCAAGCCGGTGAACGGCCGCTGCGGTCCGGGCACGCGCATTCCGTTCCTGCTGATCTCGCCGTGGGCCAAGACGAACTA CGTCAGCCACGTGCCGATCACGCAGGCGTCGGTGGCGCGCTTCATCGAAGACAACTGGCTCGGCGGCACGCGCCTGGGCG GCGGTTCGTTCGATGCGACGGCCGGCGACATGAGCGACCTGCTGAACCTGACCGGCTCGGCCAACACGACGGCGCTGTTC CTCGATCCGTCGGTGGGTACGCCGCTGAGCGCGGCACCGGCCAACTGA
Upstream 100 bases:
>100_bases GGTATCCCGCTTCGAAGGCCCCGCCCGCTACCAAAAATGGTCCGCGCCGTCCCGCACGGGGAATGAAACAACAGACGGCC TTCCAATGGAGTCTCACACA
Downstream 100 bases:
>100_bases TCCGCCACGATGTAACGAAACCGGCCGGCGCGCGAGCGCCGGCCTTTTGCCTGTGCGGCCGCCGTCTCGGGCGGCCACCC CGACTCGACCACACCAGCAT
Product: phosphoesterase family protein
Products: NA
Alternate protein names: PLC-N; Phosphatidylcholine cholinephosphohydrolase; Phosphatidylcholine-hydrolyzing phospholipase C; PC-PLC [H]
Number of amino acids: Translated: 575; Mature: 575
Protein sequence:
>575_residues MLLRRTLIATACVASAITLYACGGNDDSSASNSTTPSSSPSSTVSAQDALQTKTPIKHLVVIYGENVSFDHYFGTYPNAA NLAGEPAFTPAANTQTDIDNLGPATSALRTANGNQTNPANGSDASGPFRLDRTQAASADQNHAYTAEQQAYDNGAADLFP LYTGRATPGGVGGFGTKGQVMGYYDGNTVTALWNYASHYAMSDNAFSDTYGPSTPGALELVSGNTNGMQIVKTSKASSTK LATSYYVNDGQSGYTMINDVDPGYDVCSSTTDQAMMQGKNIGDLLNAQKITWGGFMGGFNLSTKNADGSTGCARKTMATA VGAATNDYIPHHNWFQYFASTANPNHTRPSSIAAIGSSLETDGKTAEPANHQYDSDDFFAAVQAGNFPSVSFLKAPAAQD AHAGYSDPLDEQLFVTKVVNFLMQQPDWKNTAVVVTYDDSDGWYDHKYVTPTHASFDAVDQLNGDGVCGTGSASVPLGVT GKPVNGRCGPGTRIPFLLISPWAKTNYVSHVPITQASVARFIEDNWLGGTRLGGGSFDATAGDMSDLLNLTGSANTTALF LDPSVGTPLSAAPAN
Sequences:
>Translated_575_residues MLLRRTLIATACVASAITLYACGGNDDSSASNSTTPSSSPSSTVSAQDALQTKTPIKHLVVIYGENVSFDHYFGTYPNAA NLAGEPAFTPAANTQTDIDNLGPATSALRTANGNQTNPANGSDASGPFRLDRTQAASADQNHAYTAEQQAYDNGAADLFP LYTGRATPGGVGGFGTKGQVMGYYDGNTVTALWNYASHYAMSDNAFSDTYGPSTPGALELVSGNTNGMQIVKTSKASSTK LATSYYVNDGQSGYTMINDVDPGYDVCSSTTDQAMMQGKNIGDLLNAQKITWGGFMGGFNLSTKNADGSTGCARKTMATA VGAATNDYIPHHNWFQYFASTANPNHTRPSSIAAIGSSLETDGKTAEPANHQYDSDDFFAAVQAGNFPSVSFLKAPAAQD AHAGYSDPLDEQLFVTKVVNFLMQQPDWKNTAVVVTYDDSDGWYDHKYVTPTHASFDAVDQLNGDGVCGTGSASVPLGVT GKPVNGRCGPGTRIPFLLISPWAKTNYVSHVPITQASVARFIEDNWLGGTRLGGGSFDATAGDMSDLLNLTGSANTTALF LDPSVGTPLSAAPAN >Mature_575_residues MLLRRTLIATACVASAITLYACGGNDDSSASNSTTPSSSPSSTVSAQDALQTKTPIKHLVVIYGENVSFDHYFGTYPNAA NLAGEPAFTPAANTQTDIDNLGPATSALRTANGNQTNPANGSDASGPFRLDRTQAASADQNHAYTAEQQAYDNGAADLFP LYTGRATPGGVGGFGTKGQVMGYYDGNTVTALWNYASHYAMSDNAFSDTYGPSTPGALELVSGNTNGMQIVKTSKASSTK LATSYYVNDGQSGYTMINDVDPGYDVCSSTTDQAMMQGKNIGDLLNAQKITWGGFMGGFNLSTKNADGSTGCARKTMATA VGAATNDYIPHHNWFQYFASTANPNHTRPSSIAAIGSSLETDGKTAEPANHQYDSDDFFAAVQAGNFPSVSFLKAPAAQD AHAGYSDPLDEQLFVTKVVNFLMQQPDWKNTAVVVTYDDSDGWYDHKYVTPTHASFDAVDQLNGDGVCGTGSASVPLGVT GKPVNGRCGPGTRIPFLLISPWAKTNYVSHVPITQASVARFIEDNWLGGTRLGGGSFDATAGDMSDLLNLTGSANTTALF LDPSVGTPLSAAPAN
Specific function: Hydrolyzes phosphatidylserine as well as phosphatidylcholine [H]
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR008475 - InterPro: IPR017767 - InterPro: IPR006311 [H]
Pfam domain/function: PF05506 DUF756; PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 60167; Mature: 60167
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLRRTLIATACVASAITLYACGGNDDSSASNSTTPSSSPSSTVSAQDALQTKTPIKHLV CCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEE VIYGENVSFDHYFGTYPNAANLAGEPAFTPAANTQTDIDNLGPATSALRTANGNQTNPAN EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCCC GSDASGPFRLDRTQAASADQNHAYTAEQQAYDNGAADLFPLYTGRATPGGVGGFGTKGQV CCCCCCCEEECCHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCE MGYYDGNTVTALWNYASHYAMSDNAFSDTYGPSTPGALELVSGNTNGMQIVKTSKASSTK EEEECCCEEEEEEHHHHHEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCE LATSYYVNDGQSGYTMINDVDPGYDVCSSTTDQAMMQGKNIGDLLNAQKITWGGFMGGFN EEEEEEEECCCCCCEEEECCCCCHHHHCCCHHHHHHCCCCHHHHHCCCEEEECCEECCCC LSTKNADGSTGCARKTMATAVGAATNDYIPHHNWFQYFASTANPNHTRPSSIAAIGSSLE CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCC TDGKTAEPANHQYDSDDFFAAVQAGNFPSVSFLKAPAAQDAHAGYSDPLDEQLFVTKVVN CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHH FLMQQPDWKNTAVVVTYDDSDGWYDHKYVTPTHASFDAVDQLNGDGVCGTGSASVPLGVT HHHCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCHHHHHHCCCCCEECCCCCCCCCCCC GKPVNGRCGPGTRIPFLLISPWAKTNYVSHVPITQASVARFIEDNWLGGTRLGGGSFDAT CCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCC AGDMSDLLNLTGSANTTALFLDPSVGTPLSAAPAN CHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MLLRRTLIATACVASAITLYACGGNDDSSASNSTTPSSSPSSTVSAQDALQTKTPIKHLV CCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEE VIYGENVSFDHYFGTYPNAANLAGEPAFTPAANTQTDIDNLGPATSALRTANGNQTNPAN EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCCC GSDASGPFRLDRTQAASADQNHAYTAEQQAYDNGAADLFPLYTGRATPGGVGGFGTKGQV CCCCCCCEEECCHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCE MGYYDGNTVTALWNYASHYAMSDNAFSDTYGPSTPGALELVSGNTNGMQIVKTSKASSTK EEEECCCEEEEEEHHHHHEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCE LATSYYVNDGQSGYTMINDVDPGYDVCSSTTDQAMMQGKNIGDLLNAQKITWGGFMGGFN EEEEEEEECCCCCCEEEECCCCCHHHHCCCHHHHHHCCCCHHHHHCCCEEEECCEECCCC LSTKNADGSTGCARKTMATAVGAATNDYIPHHNWFQYFASTANPNHTRPSSIAAIGSSLE CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCC TDGKTAEPANHQYDSDDFFAAVQAGNFPSVSFLKAPAAQDAHAGYSDPLDEQLFVTKVVN CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHH FLMQQPDWKNTAVVVTYDDSDGWYDHKYVTPTHASFDAVDQLNGDGVCGTGSASVPLGVT HHHCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCHHHHHHCCCCCEECCCCCCCCCCCC GKPVNGRCGPGTRIPFLLISPWAKTNYVSHVPITQASVARFIEDNWLGGTRLGGGSFDAT CCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCC AGDMSDLLNLTGSANTTALFLDPSVGTPLSAAPAN CHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2120196; 10984043 [H]