Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238024584
Identifier: 238024584
GI number: 238024584
Start: 1529093
End: 1530802
Strand: Reverse
Name: 238024584
Synonym: bglu_2g11950
Alternate gene names: NA
Gene position: 1530802-1529093 (Counterclockwise)
Preceding gene: 238024586
Following gene: 238024583
Centisome position: 54.14
GC content: 75.96
Gene sequence:
>1710_bases GTGCCGCCCGCCGTTCCCGCCCCCCACGCCTTCTATTACCTCGACAACTTCGAGCGCGCGCTCGCCTGGATCGCCGAGCG TTACGACGATCTGCTCGACACGGCCGAGCAGGCCTTCCTGCGCGGGTTCGCCGGCCTGCCGCGCGCCTCGCGCGCGCTGC TGGTGCGCATGCTGATGCGCAGCGGGCCGTGGTTCCGGCGCAGCAAGCTCGTCTACCACGAGATCGGCGACGCCGCCGCG GCCGCCGCGCCGCTGGTGGCGCTCGGCTGGGTCGACGCGGCGCCGGCGCTGGCGCTCGACGCCGTATTCGCGCTGGCCAC CCGCCCGGAGCTGGCGCGGCGCTTCGCGGCGCCGAAGGGCGCGCGCAAGGCCGACTGGCTCGACGCGCTGCGCGCCGAGG CCGGGCCTGCGCTCGAACAGCCGTTCGAGGCCTGGCTGCCGGCCACCGGCGACAGCGTGTTCGAGGTCCGCATCGGCGCG CTGTGCGACCGGCTGCGGCTGATGTTCTTCGGCAACCTGCATCAGGACTGGTCGGAGTTCGTGCTGGCCGAGCTGGGCGT GCTCCAGGACGAGCGCGTGGCCTTCGAGCCGTCCTCGCGCGCGTTCCAGCAGCGTGCCGACCTGGACGCGTACCTGGCGC TGTTCGCCTGCCGCGAGGCGCTGGCCGCCTGGCCCGGGGACGCGCCGCTCGACGCGCTGACGGCCGAGGTGGCCGCCGTG GCCTGCGCGCAGGGCTGGCTGGAGACGCGCCGCGCCAAGCTGCTGCACGGCATCGGCACGGCCTGCGAGCGGCGCGCCGA CTGGCCCGGCGCGCTCGCCGCCTATGCGGCGAGCGGCTGGCCCGGCAGCCGGCACCGCCGCATCCGCGTGCTGGAGCGCG CCGGGCGCGACGCCGAGGCGCTCGCGCTGGCCGAGGCGGCCGCCGCGCAGCCGGAGAGCGAGGCGGAGCGTCAGCGCGTC GCGCGCCTGCTGCCGCGCCTGCTCAGGCGCGCCGGCCGGCCCGTCAGGCGGGCCGCGGGCGCCGCGCCGGTGGCGCGCGA GACGCTGGTGCTGGCGGCGCCGCGCGTGCCGGATTCGGTCGAGACGGCGGTGGCCCTGCACCTGTCGGGCGACGGCGCGA TCGTCTACTACGTCGAGAACACGCTGATCAATTCGCTGTTCGGCCTGCTGTGCTGGGACGCCGTGTTCGCGGCCGTGCCC GGCGCGTTCTTCCATCCGTTCCAGCGCGGCCCGGCCGACCTGCATGCGCCCGACTTCCGGGCGCGCCGCGCGGCGCGTTT CGAGGCCTGCCTCGCGCAGCTCGATTCGGGGGCCTGGCGCGACACGGTGCTGCGCCGCTACGCGCAGAAGGCGGGCATCC AGTCGCCGTTCGTGTTCTGGGGCGCGCTCGACGATGCGCTGCTCGCGCTGGCGCTCGACTGCATCGATCCCGCGCACCTG CGGCGCTGCTTCGAGCGCCTGCTCGACGATCCGCGCGACAACCGCTCGGGGCTGCCGGACCTGATCCGCTTCTGGCCGGC CGAGCGCCGCTACGAGCTGATCGAGGTGAAAGGGCCGGGCGACCGCCTGCAGGACAACCAGATCCGCTGGCTCGACTACT GCGTCGGGCACGGCATGCCGGTGCGCGTGATCGACGTGGCGTGGGCGCCGCCGGCCGCGCAGGCCGGCACGCCGCGCGAG GCGGCCGCGATGGCGGAGCCGGGCGCATGA
Upstream 100 bases:
>100_bases GCCACGCCGGCAGCGGCAGCGGCGGGTTTCGCTTGCGGTCCCCCGCGCTCCATGCGCTATCATTCACCCCTGTACAAACG TACAGGCTTCGACAATTCCC
Downstream 100 bases:
>100_bases ACTACACCGTGGCGGTGCGCGCCATGTGCGAGTTCACCGCGAAGCGCGGCGACCTCGACCTGCGCTTCACGCCCGCGCCG TCGGCGCAGGAGGGCATCGT
Product: VRR-NUC domain-containing protein
Products: NA
Alternate protein names: VRR-NUC Domain Protein; VRR-NUC Domain Family Protein; Vrr-Nuc Domain Protein; DNA Polymerase III Epsilon Subunit; Vrr-Nuc DomaiN-Containing Protein
Number of amino acids: Translated: 569; Mature: 568
Protein sequence:
>569_residues MPPAVPAPHAFYYLDNFERALAWIAERYDDLLDTAEQAFLRGFAGLPRASRALLVRMLMRSGPWFRRSKLVYHEIGDAAA AAAPLVALGWVDAAPALALDAVFALATRPELARRFAAPKGARKADWLDALRAEAGPALEQPFEAWLPATGDSVFEVRIGA LCDRLRLMFFGNLHQDWSEFVLAELGVLQDERVAFEPSSRAFQQRADLDAYLALFACREALAAWPGDAPLDALTAEVAAV ACAQGWLETRRAKLLHGIGTACERRADWPGALAAYAASGWPGSRHRRIRVLERAGRDAEALALAEAAAAQPESEAERQRV ARLLPRLLRRAGRPVRRAAGAAPVARETLVLAAPRVPDSVETAVALHLSGDGAIVYYVENTLINSLFGLLCWDAVFAAVP GAFFHPFQRGPADLHAPDFRARRAARFEACLAQLDSGAWRDTVLRRYAQKAGIQSPFVFWGALDDALLALALDCIDPAHL RRCFERLLDDPRDNRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLDYCVGHGMPVRVIDVAWAPPAAQAGTPRE AAAMAEPGA
Sequences:
>Translated_569_residues MPPAVPAPHAFYYLDNFERALAWIAERYDDLLDTAEQAFLRGFAGLPRASRALLVRMLMRSGPWFRRSKLVYHEIGDAAA AAAPLVALGWVDAAPALALDAVFALATRPELARRFAAPKGARKADWLDALRAEAGPALEQPFEAWLPATGDSVFEVRIGA LCDRLRLMFFGNLHQDWSEFVLAELGVLQDERVAFEPSSRAFQQRADLDAYLALFACREALAAWPGDAPLDALTAEVAAV ACAQGWLETRRAKLLHGIGTACERRADWPGALAAYAASGWPGSRHRRIRVLERAGRDAEALALAEAAAAQPESEAERQRV ARLLPRLLRRAGRPVRRAAGAAPVARETLVLAAPRVPDSVETAVALHLSGDGAIVYYVENTLINSLFGLLCWDAVFAAVP GAFFHPFQRGPADLHAPDFRARRAARFEACLAQLDSGAWRDTVLRRYAQKAGIQSPFVFWGALDDALLALALDCIDPAHL RRCFERLLDDPRDNRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLDYCVGHGMPVRVIDVAWAPPAAQAGTPRE AAAMAEPGA >Mature_568_residues PPAVPAPHAFYYLDNFERALAWIAERYDDLLDTAEQAFLRGFAGLPRASRALLVRMLMRSGPWFRRSKLVYHEIGDAAAA AAPLVALGWVDAAPALALDAVFALATRPELARRFAAPKGARKADWLDALRAEAGPALEQPFEAWLPATGDSVFEVRIGAL CDRLRLMFFGNLHQDWSEFVLAELGVLQDERVAFEPSSRAFQQRADLDAYLALFACREALAAWPGDAPLDALTAEVAAVA CAQGWLETRRAKLLHGIGTACERRADWPGALAAYAASGWPGSRHRRIRVLERAGRDAEALALAEAAAAQPESEAERQRVA RLLPRLLRRAGRPVRRAAGAAPVARETLVLAAPRVPDSVETAVALHLSGDGAIVYYVENTLINSLFGLLCWDAVFAAVPG AFFHPFQRGPADLHAPDFRARRAARFEACLAQLDSGAWRDTVLRRYAQKAGIQSPFVFWGALDDALLALALDCIDPAHLR RCFERLLDDPRDNRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLDYCVGHGMPVRVIDVAWAPPAAQAGTPREA AAMAEPGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI226246523, Length=182, Percent_Identity=30.2197802197802, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62429; Mature: 62298
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPAVPAPHAFYYLDNFERALAWIAERYDDLLDTAEQAFLRGFAGLPRASRALLVRMLMR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SGPWFRRSKLVYHEIGDAAAAAAPLVALGWVDAAPALALDAVFALATRPELARRFAAPKG CCCCHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC ARKADWLDALRAEAGPALEQPFEAWLPATGDSVFEVRIGALCDRLRLMFFGNLHQDWSEF CCHHHHHHHHHHHCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH VLAELGVLQDERVAFEPSSRAFQQRADLDAYLALFACREALAAWPGDAPLDALTAEVAAV HHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ACAQGWLETRRAKLLHGIGTACERRADWPGALAAYAASGWPGSRHRRIRVLERAGRDAEA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH LALAEAAAAQPESEAERQRVARLLPRLLRRAGRPVRRAAGAAPVARETLVLAAPRVPDSV HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHEEECCCCCCCC ETAVALHLSGDGAIVYYVENTLINSLFGLLCWDAVFAAVPGAFFHPFQRGPADLHAPDFR CCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHCCCCCCCCCCHH ARRAARFEACLAQLDSGAWRDTVLRRYAQKAGIQSPFVFWGALDDALLALALDCIDPAHL HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCHHHH RRCFERLLDDPRDNRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLDYCVGHGMP HHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCC VRVIDVAWAPPAAQAGTPREAAAMAEPGA EEEEEEECCCCCCCCCCCHHHHCCCCCCC >Mature Secondary Structure PPAVPAPHAFYYLDNFERALAWIAERYDDLLDTAEQAFLRGFAGLPRASRALLVRMLMR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SGPWFRRSKLVYHEIGDAAAAAAPLVALGWVDAAPALALDAVFALATRPELARRFAAPKG CCCCHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC ARKADWLDALRAEAGPALEQPFEAWLPATGDSVFEVRIGALCDRLRLMFFGNLHQDWSEF CCHHHHHHHHHHHCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH VLAELGVLQDERVAFEPSSRAFQQRADLDAYLALFACREALAAWPGDAPLDALTAEVAAV HHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ACAQGWLETRRAKLLHGIGTACERRADWPGALAAYAASGWPGSRHRRIRVLERAGRDAEA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH LALAEAAAAQPESEAERQRVARLLPRLLRRAGRPVRRAAGAAPVARETLVLAAPRVPDSV HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHEEECCCCCCCC ETAVALHLSGDGAIVYYVENTLINSLFGLLCWDAVFAAVPGAFFHPFQRGPADLHAPDFR CCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHCCCCCCCCCCHH ARRAARFEACLAQLDSGAWRDTVLRRYAQKAGIQSPFVFWGALDDALLALALDCIDPAHL HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCHHHH RRCFERLLDDPRDNRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLDYCVGHGMP HHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCC VRVIDVAWAPPAAQAGTPREAAAMAEPGA EEEEEEECCCCCCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA