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The map label for this gene is yrbE [H]

Identifier: 23100875

GI number: 23100875

Start: 3557780

End: 3558751

Strand: Reverse

Name: yrbE [H]

Synonym: OB3420

Alternate gene names: 23100875

Gene position: 3558751-3557780 (Counterclockwise)

Preceding gene: 23100876

Following gene: 23100874

Centisome position: 98.02

GC content: 36.42

Gene sequence:

>972_bases
ATGAAAATAGGAATTATTAGTTTCGCACATTCTCATGCACATAGCTATGCACATGCATTGCAATCAATAGAAAACATTGA
AATTGTTGGCATATATGATGACAACAAAGAGAGGGGGAATGAGGCTGCTCGTAAATATTGTTCTAATTATTATGATAACC
TGGAGCACTTCTTACGTCTCCCATTAGATGCGGTAATTATTGCTTCAGAAAATGCAAAGCACCATGAACATACTATAGCA
GCTGCCAATAAAGGAATTCATATATTATGTGAGAAACCTATAGCTACTACTGTAGAACATGCTCGTGAAATGATTGATGT
ATGTAAAAAAAATAATGTTCTCCTGCAGATCGCTTTTCCGGTCCGTTTTAGCACACCTGTTGGTAAAGGAAAAGGAATCA
TTAATTCAGGAGAGATCGGTAATATTGTAGCCATAAAAGGCACTAATCGCGGAACGAATCCTGGAGGATGGTTTGTGAAT
AAAGAGGATTCTGGTGGTGGTGCCGTTATGGACCATACTGTTCATGTGGTTGATTTATTAAGGTGGTATATGAACGCCAA
TGTTAAAGAAGTCTATGCAGAAATAGGGAATTTAATATCCGAAGATGAGATAGATGATTCTGGAATTATCACTATGGAAT
TTGATAATAATGTCTTCGCCACACTTGATTGTAGTTGGTCAAGAAATGACTCATTCCCTACATGGGGAGATGTTACGTTA
GAATTTATTGGAACAAAAGGTACGTTATCCATTGACGCTTTCTCTCAAAAAACAGATGTATACTCAAATGATGGAGCTCA
TTGGGATTTCTGGGGAGATGATATGGATGCGATGTTAGTAGAAGATTTTATAAATAATGTAAAAAGTAATAAAAATCCAA
GTATAACTGGTGAGGATGGTTTAGAGGCTTTAGAGGTTGCTCTAGCTAGTTATGAATCTTCTAGTAGAAAACAACCAGTA
GAGGTAAATTAG

Upstream 100 bases:

>100_bases
TAGATGCATATAAAGCCATGGAAATCGCTCTAGCGGCCCTTAAGTCAATTGATACAGGAAAGGTTGTAGAAATCTCGAAT
AAAGAAATGGGGATTTTATT

Downstream 100 bases:

>100_bases
TTAGAAGGAGTGAAACAATGCGAAAAGGTATAAACCAATGGTGCTATCCCGAAGGTACTCCTATAGAAAAAGTTTTCTCA
TATAGTAATCAATCAAATTT

Product: NADH-dependent dyhydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKIGIISFAHSHAHSYAHALQSIENIEIVGIYDDNKERGNEAARKYCSNYYDNLEHFLRLPLDAVIIASENAKHHEHTIA
AANKGIHILCEKPIATTVEHAREMIDVCKKNNVLLQIAFPVRFSTPVGKGKGIINSGEIGNIVAIKGTNRGTNPGGWFVN
KEDSGGGAVMDHTVHVVDLLRWYMNANVKEVYAEIGNLISEDEIDDSGIITMEFDNNVFATLDCSWSRNDSFPTWGDVTL
EFIGTKGTLSIDAFSQKTDVYSNDGAHWDFWGDDMDAMLVEDFINNVKSNKNPSITGEDGLEALEVALASYESSSRKQPV
EVN

Sequences:

>Translated_323_residues
MKIGIISFAHSHAHSYAHALQSIENIEIVGIYDDNKERGNEAARKYCSNYYDNLEHFLRLPLDAVIIASENAKHHEHTIA
AANKGIHILCEKPIATTVEHAREMIDVCKKNNVLLQIAFPVRFSTPVGKGKGIINSGEIGNIVAIKGTNRGTNPGGWFVN
KEDSGGGAVMDHTVHVVDLLRWYMNANVKEVYAEIGNLISEDEIDDSGIITMEFDNNVFATLDCSWSRNDSFPTWGDVTL
EFIGTKGTLSIDAFSQKTDVYSNDGAHWDFWGDDMDAMLVEDFINNVKSNKNPSITGEDGLEALEVALASYESSSRKQPV
EVN
>Mature_323_residues
MKIGIISFAHSHAHSYAHALQSIENIEIVGIYDDNKERGNEAARKYCSNYYDNLEHFLRLPLDAVIIASENAKHHEHTIA
AANKGIHILCEKPIATTVEHAREMIDVCKKNNVLLQIAFPVRFSTPVGKGKGIINSGEIGNIVAIKGTNRGTNPGGWFVN
KEDSGGGAVMDHTVHVVDLLRWYMNANVKEVYAEIGNLISEDEIDDSGIITMEFDNNVFATLDCSWSRNDSFPTWGDVTL
EFIGTKGTLSIDAFSQKTDVYSNDGAHWDFWGDDMDAMLVEDFINNVKSNKNPSITGEDGLEALEVALASYESSSRKQPV
EVN

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=347, Percent_Identity=26.8011527377522, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082405, Length=239, Percent_Identity=28.4518828451883, Blast_Score=79, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24581117, Length=210, Percent_Identity=24.7619047619048, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35706; Mature: 35706

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGIISFAHSHAHSYAHALQSIENIEIVGIYDDNKERGNEAARKYCSNYYDNLEHFLRL
CEEEEEEEHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC
PLDAVIIASENAKHHEHTIAAANKGIHILCEKPIATTVEHAREMIDVCKKNNVLLQIAFP
CCEEEEEECCCCCCHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEC
VRFSTPVGKGKGIINSGEIGNIVAIKGTNRGTNPGGWFVNKEDSGGGAVMDHTVHVVDLL
EEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHH
RWYMNANVKEVYAEIGNLISEDEIDDSGIITMEFDNNVFATLDCSWSRNDSFPTWGDVTL
HHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEE
EFIGTKGTLSIDAFSQKTDVYSNDGAHWDFWGDDMDAMLVEDFINNVKSNKNPSITGEDG
EEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
LEALEVALASYESSSRKQPVEVN
HHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKIGIISFAHSHAHSYAHALQSIENIEIVGIYDDNKERGNEAARKYCSNYYDNLEHFLRL
CEEEEEEEHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC
PLDAVIIASENAKHHEHTIAAANKGIHILCEKPIATTVEHAREMIDVCKKNNVLLQIAFP
CCEEEEEECCCCCCHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEC
VRFSTPVGKGKGIINSGEIGNIVAIKGTNRGTNPGGWFVNKEDSGGGAVMDHTVHVVDLL
EEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHH
RWYMNANVKEVYAEIGNLISEDEIDDSGIITMEFDNNVFATLDCSWSRNDSFPTWGDVTL
HHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEE
EFIGTKGTLSIDAFSQKTDVYSNDGAHWDFWGDDMDAMLVEDFINNVKSNKNPSITGEDG
EEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
LEALEVALASYESSSRKQPVEVN
HHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]