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The map label for this gene is ykkD [H]

Identifier: 23100718

GI number: 23100718

Start: 3400872

End: 3401189

Strand: Reverse

Name: ykkD [H]

Synonym: OB3263

Alternate gene names: 23100718

Gene position: 3401189-3400872 (Counterclockwise)

Preceding gene: 23100719

Following gene: 23100716

Centisome position: 93.68

GC content: 34.59

Gene sequence:

>318_bases
ATGAATTGGATCATCCTAATTCTTGCAGGTCTATCCGAAGTAGTAGGTGTTAACGGAATTCAGAAAGTATCTGCTGGGAA
AAAGAAATCTGGATTTGCTTTTTTGATTATTGGATTTGCTGTTAGCTTAACCTTATTATCCATTGCAATGTCTACTATTC
CATTAGGTGTTGCTTATGCAGTATGGACGGGTATGGGAACAGTTGGAAGTGTAGTGATTGGTATGATTTTTTATAATGAT
TCAGCAGATCGCAAACGTATATTCTTCTTAAGTTTAATAGTTGTTGCAGTAATAGGATTACGAATCGTTTCAAATTAA

Upstream 100 bases:

>100_bases
ACGTAGGTGTTATTTTATTTGTTGTATTACTATTAGTCGGAGTATTAGGATTAAAATCCGTTACAGGTTAAAAAAAGCAA
CAGAAAGAGGTTGGTAAAGC

Downstream 100 bases:

>100_bases
CGGTTGCTTAGGAAAGATGCGTTCATACAAGGGATATGTAAGCCCTTTTGGGTTTGTGAATTTTATAGTGAACAGGAAAG
AGGCTGAGACAATTGTGCGA

Product: chaperonin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MNWIILILAGLSEVVGVNGIQKVSAGKKKSGFAFLIIGFAVSLTLLSIAMSTIPLGVAYAVWTGMGTVGSVVIGMIFYND
SADRKRIFFLSLIVVAVIGLRIVSN

Sequences:

>Translated_105_residues
MNWIILILAGLSEVVGVNGIQKVSAGKKKSGFAFLIIGFAVSLTLLSIAMSTIPLGVAYAVWTGMGTVGSVVIGMIFYND
SADRKRIFFLSLIVVAVIGLRIVSN
>Mature_105_residues
MNWIILILAGLSEVVGVNGIQKVSAGKKKSGFAFLIIGFAVSLTLLSIAMSTIPLGVAYAVWTGMGTVGSVVIGMIFYND
SADRKRIFFLSLIVVAVIGLRIVSN

Specific function: Part of a multidrug efflux pump. Confers resistance to a broad range of toxic compounds such as cationic dyes, neutral and anionic antimicrobials [H]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family. YkkC/ykkD (TC 2.A.7.1.5) subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082378, Length=105, Percent_Identity=39.0476190476191, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 11092; Mature: 11092

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWIILILAGLSEVVGVNGIQKVSAGKKKSGFAFLIIGFAVSLTLLSIAMSTIPLGVAYA
CCEEEEEEHHHHHHHCCCCHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
VWTGMGTVGSVVIGMIFYNDSADRKRIFFLSLIVVAVIGLRIVSN
HHHCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNWIILILAGLSEVVGVNGIQKVSAGKKKSGFAFLIIGFAVSLTLLSIAMSTIPLGVAYA
CCEEEEEEHHHHHHHCCCCHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
VWTGMGTVGSVVIGMIFYNDSADRKRIFFLSLIVVAVIGLRIVSN
HHHCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA