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The map label for this gene is ydfH [C]

Identifier: 23100714

GI number: 23100714

Start: 3395310

End: 3395930

Strand: Reverse

Name: ydfH [C]

Synonym: OB3259

Alternate gene names: 23100714

Gene position: 3395930-3395310 (Counterclockwise)

Preceding gene: 23100715

Following gene: 23100713

Centisome position: 93.54

GC content: 33.01

Gene sequence:

>621_bases
ATGTTATTAAAAGACGTTGCCTATCAGGAAATAAAATCCAAAATTTTAGAAGAGCATTATGAAGCGGGACAATTTTTATC
AGAGCGTACATTAATAGATGAGTTAGGTATGAGTAAAACACCAATAAAAAATGCGCTCGTAAGATTAGAGTCTGAAGGAT
TTGTTACTGTTTCGTCAAAGCAAGGAATCATTGTCAATGATATTTCTATTGAACGAATCAACGATATATATAATTTGCGA
ATAGCATTAGAAACGTTTAATTGCCAAGAACTGTATCACCGTATTACAGATGAACAATTAAAAGAATTGGAACAAAACGT
ACAAGCAACTAAAGAGGCTGCTAAAACGAAAGATGTTACATTATTTGCTACATTAGACCATGAGTTTCACTTAGCGATAA
GTCAATTTGTAGCAAATAAGGAGATCACGAGAGTTTTATTAAACTACCAAGATCACTTAAGAAGAATTACACTTCGCCAT
CTCAAGAAAGATCCTGGTAGGGTAGAGAAGTTTTACTCCGAACATGTAGAAGTTTTAGATGCTTTAAAAACAGGAGATAT
AAAGTGCGTAGAGTTAATGAAAAAGCATCTATTGGACTCCAAGATGATGTACTTTCAATAA

Upstream 100 bases:

>100_bases
AGAAATTGCATTAAAGAGTGGTCAACTTGGAGGACCAGCGTTTTTCGAGAAAGTCTATCAGTCAGGCTCTAAATAATTTT
GTTAAAGGATGTATTTGAAT

Downstream 100 bases:

>100_bases
CTCCTGCTGATATAAGAGGGAGAGATAGTTTATGAAAGCGGTATTTGTAGAAGATGCTGAGAAAATTATTGTGAAAGATA
TAGAGGTCCCCGAGTTAAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MLLKDVAYQEIKSKILEEHYEAGQFLSERTLIDELGMSKTPIKNALVRLESEGFVTVSSKQGIIVNDISIERINDIYNLR
IALETFNCQELYHRITDEQLKELEQNVQATKEAAKTKDVTLFATLDHEFHLAISQFVANKEITRVLLNYQDHLRRITLRH
LKKDPGRVEKFYSEHVEVLDALKTGDIKCVELMKKHLLDSKMMYFQ

Sequences:

>Translated_206_residues
MLLKDVAYQEIKSKILEEHYEAGQFLSERTLIDELGMSKTPIKNALVRLESEGFVTVSSKQGIIVNDISIERINDIYNLR
IALETFNCQELYHRITDEQLKELEQNVQATKEAAKTKDVTLFATLDHEFHLAISQFVANKEITRVLLNYQDHLRRITLRH
LKKDPGRVEKFYSEHVEVLDALKTGDIKCVELMKKHLLDSKMMYFQ
>Mature_206_residues
MLLKDVAYQEIKSKILEEHYEAGQFLSERTLIDELGMSKTPIKNALVRLESEGFVTVSSKQGIIVNDISIERINDIYNLR
IALETFNCQELYHRITDEQLKELEQNVQATKEAAKTKDVTLFATLDHEFHLAISQFVANKEITRVLLNYQDHLRRITLRH
LKKDPGRVEKFYSEHVEVLDALKTGDIKCVELMKKHLLDSKMMYFQ

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=180, Percent_Identity=25.5555555555556, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24025; Mature: 24025

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKDVAYQEIKSKILEEHYEAGQFLSERTLIDELGMSKTPIKNALVRLESEGFVTVSSK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEECCCCEEEEECC
QGIIVNDISIERINDIYNLRIALETFNCQELYHRITDEQLKELEQNVQATKEAAKTKDVT
CCEEEECCHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LFATLDHEFHLAISQFVANKEITRVLLNYQDHLRRITLRHLKKDPGRVEKFYSEHVEVLD
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ALKTGDIKCVELMKKHLLDSKMMYFQ
HHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLKDVAYQEIKSKILEEHYEAGQFLSERTLIDELGMSKTPIKNALVRLESEGFVTVSSK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEECCCCEEEEECC
QGIIVNDISIERINDIYNLRIALETFNCQELYHRITDEQLKELEQNVQATKEAAKTKDVT
CCEEEECCHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LFATLDHEFHLAISQFVANKEITRVLLNYQDHLRRITLRHLKKDPGRVEKFYSEHVEVLD
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ALKTGDIKCVELMKKHLLDSKMMYFQ
HHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]