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The map label for this gene is rbsC [H]

Identifier: 23100028

GI number: 23100028

Start: 2631618

End: 2632556

Strand: Reverse

Name: rbsC [H]

Synonym: OB2573

Alternate gene names: 23100028

Gene position: 2632556-2631618 (Counterclockwise)

Preceding gene: 23100029

Following gene: 23100027

Centisome position: 72.51

GC content: 35.04

Gene sequence:

>939_bases
ATGAATAATAATAAAATGGCTTCGATGTGGCAAAAAGTAATCCCGTTAATAGCTTTAGTATTGCTAATAATCACTGTTAC
GATCATGAACCCGGCATTTTTAGATCCAGCTAATATTATGAATCTACTAAGACAAATTTCCATTAATGGATTAATTGCTT
TTGGTATGACTTTTGTAATTCTAACAGGTGGAATTGATTTATCGGTAGGATCTATTCTTGCATTGTCTAGTGCTTTAGCT
GCAATAATGATGACATCGGGCATTGATCCAATTTTAGCAGTAATTATAGGTGTATTATTAGGTGCAGTATTTGGTGCATT
GAATGGTATTTTGGTTTCAAAAGGTAACTTAGCACCGTTTATCGTTACATTAGCAACAATGACGATATTTAGAGGGTTAA
CATTAGTATTTACAGATGGAAAACCGATAACTGGATTAGGAGACTCCTATGCTTTTCAATTATTTGGTAAAGGATACTTT
TTAGGAATACCAGTACCAGCAGTAACGATGATCATTGCATTTGTAATTCTTTGGTTTTTACTTCATAAAATGTCATTTGG
GCGTAAAACATATGCAATCGGCGGAAATGAGAAGGCGGCAAAAATTTCAGGTATAAAAGTAGATCGTGTCAAAATCTTTA
TTTATTCTATTAGTGGAATGATGGCAGCTCTAGCAGGAATGATTCTTACTTCCCGCCTTAATTCTGCTCAACCAACTGCA
GGTACTTCTTATGAAATGGATGCTATTGCGGCAGTAGTTCTAGGTGGTACAAGCCTTGCTGGCGGGAAAGGTCGTATAGC
AGGTACGTTTATCGGAGTATTAATTATCGGTATTTTAAATAATGGAATGAACTTACTTGGAATTTCCTCTTTCTATCAAC
AAGTAGTAAAAGGTGTTGTTATCTTAATCGCAGTGCTACTAGATCGTAAAAAATCCTAA

Upstream 100 bases:

>100_bases
CGAATAATGGTTATCCACGAAGGAGAGATTTCAGGAGAATTAGTTAGAGAAGAGGCGACGCAAGAAAAAATAATGACATA
TGCTACAGGAGGGAATGGAC

Downstream 100 bases:

>100_bases
TGAGGTGAATGTAATGAAAAAATTCCAGATTGTATTCATAGCTATAATTATTATTTTTTTAGCAGCATGTTCAATGGAAA
GTCCGTTTGTAAATAATGAT

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MNNNKMASMWQKVIPLIALVLLIITVTIMNPAFLDPANIMNLLRQISINGLIAFGMTFVILTGGIDLSVGSILALSSALA
AIMMTSGIDPILAVIIGVLLGAVFGALNGILVSKGNLAPFIVTLATMTIFRGLTLVFTDGKPITGLGDSYAFQLFGKGYF
LGIPVPAVTMIIAFVILWFLLHKMSFGRKTYAIGGNEKAAKISGIKVDRVKIFIYSISGMMAALAGMILTSRLNSAQPTA
GTSYEMDAIAAVVLGGTSLAGGKGRIAGTFIGVLIIGILNNGMNLLGISSFYQQVVKGVVILIAVLLDRKKS

Sequences:

>Translated_312_residues
MNNNKMASMWQKVIPLIALVLLIITVTIMNPAFLDPANIMNLLRQISINGLIAFGMTFVILTGGIDLSVGSILALSSALA
AIMMTSGIDPILAVIIGVLLGAVFGALNGILVSKGNLAPFIVTLATMTIFRGLTLVFTDGKPITGLGDSYAFQLFGKGYF
LGIPVPAVTMIIAFVILWFLLHKMSFGRKTYAIGGNEKAAKISGIKVDRVKIFIYSISGMMAALAGMILTSRLNSAQPTA
GTSYEMDAIAAVVLGGTSLAGGKGRIAGTFIGVLIIGILNNGMNLLGISSFYQQVVKGVVILIAVLLDRKKS
>Mature_312_residues
MNNNKMASMWQKVIPLIALVLLIITVTIMNPAFLDPANIMNLLRQISINGLIAFGMTFVILTGGIDLSVGSILALSSALA
AIMMTSGIDPILAVIIGVLLGAVFGALNGILVSKGNLAPFIVTLATMTIFRGLTLVFTDGKPITGLGDSYAFQLFGKGYF
LGIPVPAVTMIIAFVILWFLLHKMSFGRKTYAIGGNEKAAKISGIKVDRVKIFIYSISGMMAALAGMILTSRLNSAQPTA
GTSYEMDAIAAVVLGGTSLAGGKGRIAGTFIGVLIIGILNNGMNLLGISSFYQQVVKGVVILIAVLLDRKKS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=306, Percent_Identity=53.921568627451, Blast_Score=294, Evalue=4e-81,
Organism=Escherichia coli, GI1790524, Length=307, Percent_Identity=44.299674267101, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI145693152, Length=304, Percent_Identity=40.7894736842105, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1788896, Length=293, Percent_Identity=40.2730375426621, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1789992, Length=360, Percent_Identity=36.6666666666667, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=37.0629370629371, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1788471, Length=314, Percent_Identity=35.6687898089172, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787794, Length=302, Percent_Identity=32.7814569536424, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI145693214, Length=263, Percent_Identity=35.361216730038, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787793, Length=258, Percent_Identity=34.8837209302326, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32760; Mature: 32760

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNKMASMWQKVIPLIALVLLIITVTIMNPAFLDPANIMNLLRQISINGLIAFGMTFVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
LTGGIDLSVGSILALSSALAAIMMTSGIDPILAVIIGVLLGAVFGALNGILVSKGNLAPF
HCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHH
IVTLATMTIFRGLTLVFTDGKPITGLGDSYAFQLFGKGYFLGIPVPAVTMIIAFVILWFL
HHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHEECCCEEEECCHHHHHHHHHHHHHHHH
LHKMSFGRKTYAIGGNEKAAKISGIKVDRVKIFIYSISGMMAALAGMILTSRLNSAQPTA
HHHHHCCCEEEEECCCCCCCEECCEEEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCC
GTSYEMDAIAAVVLGGTSLAGGKGRIAGTFIGVLIIGILNNGMNLLGISSFYQQVVKGVV
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHH
ILIAVLLDRKKS
HHHHHHHHCCCC
>Mature Secondary Structure
MNNNKMASMWQKVIPLIALVLLIITVTIMNPAFLDPANIMNLLRQISINGLIAFGMTFVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
LTGGIDLSVGSILALSSALAAIMMTSGIDPILAVIIGVLLGAVFGALNGILVSKGNLAPF
HCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHH
IVTLATMTIFRGLTLVFTDGKPITGLGDSYAFQLFGKGYFLGIPVPAVTMIIAFVILWFL
HHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHEECCCEEEECCHHHHHHHHHHHHHHHH
LHKMSFGRKTYAIGGNEKAAKISGIKVDRVKIFIYSISGMMAALAGMILTSRLNSAQPTA
HHHHHCCCEEEEECCCCCCCEECCEEEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCC
GTSYEMDAIAAVVLGGTSLAGGKGRIAGTFIGVLIIGILNNGMNLLGISSFYQQVVKGVV
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHH
ILIAVLLDRKKS
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]