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The map label for this gene is ysgA [H]

Identifier: 23099587

GI number: 23099587

Start: 2168514

End: 2169254

Strand: Reverse

Name: ysgA [H]

Synonym: OB2132

Alternate gene names: 23099587

Gene position: 2169254-2168514 (Counterclockwise)

Preceding gene: 23099594

Following gene: 23099586

Centisome position: 59.75

GC content: 33.06

Gene sequence:

>741_bases
ATGATTACTTCTATAAAAAATGAAAAAGTTAAAAGTTGGAAAAAATTGCATCGAAGGAAAGAACGTTTAAAGACGAATAC
ATTCTTAATAGATGGTATCCATTTAATTCAAGAAGCTTTAAAAAGTAATTGGGTTATACAAGAGTTAATCGTCGTTGAAG
GGTATGAATTACCTAACGATGCTAAAGATGTTCCTGTTGCGTATGTAAGTGAAAATGTATTAAAAGAAATTTCACAAACA
CAAACCCCTCAAGGAGTTATTGCTGTGGTAGAGATGAATATACCGAAAGTACAAGAAGATAACAATTTGATTATACTTCT
TGATGCCATACAAGATCCTGGAAATATGGGGACTATAATTCGGACTGCTGATGCAGCTGGTGTAGATGCAGTTGTATTAG
GTGATGGATGTGTGGACATATTTAATGATAAAGTTATCCGTGCTACGCAAGGGTCAATTTTTCATATACCTATTTATACT
GCAACATTAGAACAAGAAATTCATATGTTACAAACACAAGGATTCACTATTCTTGCCACAGCACTACATGATGCAGTGGA
ATATACTGAAGTTAGCGTTCATAACAAGGTTGGCTTAATTTTAGGTAATGAAGGAGCGGGAATAGCTCCTTCATTATTGA
ACAAAGCAAATCAACGTATAAATATTCCTATTTATGGGAAAGCTGAATCATTAAATGTTGGCATTGCAGCTGGTATATTA
ATGTATCATTTAAAAAAATAA

Upstream 100 bases:

>100_bases
AACACACTCCTCTTGAAATAGTGGACTAAACATAGTTTGACCACAATGACAAAATATATGTATGATACAGATAGGAAAAT
TACGAAGGATGTTTTAAATC

Downstream 100 bases:

>100_bases
CCTTGCATGCTTAGTATGTTTTTTCTATAATGGTTTTATTACTATAAATCAATACAAGCAATGAAGGAGCTAGCAAGACT
CATTTTTGATCAATTTAGGG

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MITSIKNEKVKSWKKLHRRKERLKTNTFLIDGIHLIQEALKSNWVIQELIVVEGYELPNDAKDVPVAYVSENVLKEISQT
QTPQGVIAVVEMNIPKVQEDNNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQGSIFHIPIYT
ATLEQEIHMLQTQGFTILATALHDAVEYTEVSVHNKVGLILGNEGAGIAPSLLNKANQRINIPIYGKAESLNVGIAAGIL
MYHLKK

Sequences:

>Translated_246_residues
MITSIKNEKVKSWKKLHRRKERLKTNTFLIDGIHLIQEALKSNWVIQELIVVEGYELPNDAKDVPVAYVSENVLKEISQT
QTPQGVIAVVEMNIPKVQEDNNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQGSIFHIPIYT
ATLEQEIHMLQTQGFTILATALHDAVEYTEVSVHNKVGLILGNEGAGIAPSLLNKANQRINIPIYGKAESLNVGIAAGIL
MYHLKK
>Mature_246_residues
MITSIKNEKVKSWKKLHRRKERLKTNTFLIDGIHLIQEALKSNWVIQELIVVEGYELPNDAKDVPVAYVSENVLKEISQT
QTPQGVIAVVEMNIPKVQEDNNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQGSIFHIPIYT
ATLEQEIHMLQTQGFTILATALHDAVEYTEVSVHNKVGLILGNEGAGIAPSLLNKANQRINIPIYGKAESLNVGIAAGIL
MYHLKK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=292, Percent_Identity=28.7671232876712, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1790623, Length=233, Percent_Identity=28.3261802575107, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1790083, Length=170, Percent_Identity=31.1764705882353, Blast_Score=69, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=161, Percent_Identity=31.055900621118, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24666840, Length=275, Percent_Identity=26.1818181818182, Blast_Score=78, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27037; Mature: 27037

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSIKNEKVKSWKKLHRRKERLKTNTFLIDGIHLIQEALKSNWVIQELIVVEGYELPND
CCCCCCCHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHCCCCEEHHHEEECCCCCCC
AKDVPVAYVSENVLKEISQTQTPQGVIAVVEMNIPKVQEDNNLIILLDAIQDPGNMGTII
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCCEEEEEECCCCCCCCCEEE
RTADAAGVDAVVLGDGCVDIFNDKVIRATQGSIFHIPIYTATLEQEIHMLQTQGFTILAT
EECCCCCCCEEEECCCCHHHHCCCEEEECCCCEEEEEEEEHHHHHHHHHHHHCCCEEEHH
ALHDAVEYTEVSVHNKVGLILGNEGAGIAPSLLNKANQRINIPIYGKAESLNVGIAAGIL
HHHHHHHHHEEEECCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCHHHHHHH
MYHLKK
HHHCCC
>Mature Secondary Structure
MITSIKNEKVKSWKKLHRRKERLKTNTFLIDGIHLIQEALKSNWVIQELIVVEGYELPND
CCCCCCCHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHCCCCEEHHHEEECCCCCCC
AKDVPVAYVSENVLKEISQTQTPQGVIAVVEMNIPKVQEDNNLIILLDAIQDPGNMGTII
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCCEEEEEECCCCCCCCCEEE
RTADAAGVDAVVLGDGCVDIFNDKVIRATQGSIFHIPIYTATLEQEIHMLQTQGFTILAT
EECCCCCCCEEEECCCCHHHHCCCEEEECCCCEEEEEEEEHHHHHHHHHHHHCCCEEEHH
ALHDAVEYTEVSVHNKVGLILGNEGAGIAPSLLNKANQRINIPIYGKAESLNVGIAAGIL
HHHHHHHHHEEEECCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCHHHHHHH
MYHLKK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]