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The map label for this gene is ytcP [H]

Identifier: 23099544

GI number: 23099544

Start: 2120308

End: 2121183

Strand: Reverse

Name: ytcP [H]

Synonym: OB2089

Alternate gene names: 23099544

Gene position: 2121183-2120308 (Counterclockwise)

Preceding gene: 23099545

Following gene: 23099543

Centisome position: 58.43

GC content: 34.47

Gene sequence:

>876_bases
TTGCGAAATAGAATATCTGTAGGCAGTAAGATTTTCGACGTTATTAATTACGTATTATTGGGTTTATTAGCATTGGTTAT
GATTATCCCTTTTATACATGTAGTGGGGAGTTCGTTTGCAACTAGCGCGGAAATTGCAGAGACAAGTTTTCTATTGTTTC
CAACTGAATTTTCATTGAATGCATATAAGTATATTTTTTCCACGGATACCATTTTACGGGCATTATTGATTTCCGTTACG
GTAACGGTGGGAGGGACACTATGGAGCATGTTCTTATCCACATTAACTGCATATGGATTGTCTAGAAAAGATCTGGTTGG
GAGAAGATTTTTTAACTTTTTAATCGTATTCACCATTCTGTTTAATGGAGGGATGATTCCAACATTTTTAGTTGTTGAAC
AAACTGGTTTATTAAATTCTCTTTGGGCATTAATTATCCCAGTTTCTATCAATGCATTTAATATGATAATTTTAAGAAGT
TTTTTTATGAATCTTCCTGCTGGATTAGAAGAATCAGCAAAAATTGATGGAGCTAGTGATTTTGGTATTTTATTCCGCAT
AGTAATTCCGTGTTCATTACCTGCTATCGCTACTATTTCATTATTTTATGCTGTTACTTATTGGAACACATATATGCACG
CAATTCTTTATATTAGTGACTCTGCTAAATGGCCAGTTCAAGTGTTGTTAAGGCAGATAGTAGTTTTAGCAAGTGGTATC
AATTATGATGGTGCCACGTATACAGATGTACCTCCACCAGAAGTGACCGTTAAGATGGCAACTATTGTAGTTGCTACTGT
TCCAGTTCTGCTTGTTTATCCATTTTTACAAAAATACTTTGCAAAAGGAGCATTACTAGGTTCAGTAAAAGGTTAG

Upstream 100 bases:

>100_bases
AGGGGTGGTCGGGCTTATATTAGTCATTTTTGCAAACCGACTAGCAAAACGATTTGGGGAAGAAGGTATCTATTAATATA
TTTGGAAGGGGGAGTTCATA

Downstream 100 bases:

>100_bases
TAATATCTGAGTAAATAACGAAATGAATGGAGGCATATGTATATGTTTTGTAATATTACTGAATTTGGAGCAAAGGGAGA
TTCCAACACAGACAATACTG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MRNRISVGSKIFDVINYVLLGLLALVMIIPFIHVVGSSFATSAEIAETSFLLFPTEFSLNAYKYIFSTDTILRALLISVT
VTVGGTLWSMFLSTLTAYGLSRKDLVGRRFFNFLIVFTILFNGGMIPTFLVVEQTGLLNSLWALIIPVSINAFNMIILRS
FFMNLPAGLEESAKIDGASDFGILFRIVIPCSLPAIATISLFYAVTYWNTYMHAILYISDSAKWPVQVLLRQIVVLASGI
NYDGATYTDVPPPEVTVKMATIVVATVPVLLVYPFLQKYFAKGALLGSVKG

Sequences:

>Translated_291_residues
MRNRISVGSKIFDVINYVLLGLLALVMIIPFIHVVGSSFATSAEIAETSFLLFPTEFSLNAYKYIFSTDTILRALLISVT
VTVGGTLWSMFLSTLTAYGLSRKDLVGRRFFNFLIVFTILFNGGMIPTFLVVEQTGLLNSLWALIIPVSINAFNMIILRS
FFMNLPAGLEESAKIDGASDFGILFRIVIPCSLPAIATISLFYAVTYWNTYMHAILYISDSAKWPVQVLLRQIVVLASGI
NYDGATYTDVPPPEVTVKMATIVVATVPVLLVYPFLQKYFAKGALLGSVKG
>Mature_291_residues
MRNRISVGSKIFDVINYVLLGLLALVMIIPFIHVVGSSFATSAEIAETSFLLFPTEFSLNAYKYIFSTDTILRALLISVT
VTVGGTLWSMFLSTLTAYGLSRKDLVGRRFFNFLIVFTILFNGGMIPTFLVVEQTGLLNSLWALIIPVSINAFNMIILRS
FFMNLPAGLEESAKIDGASDFGILFRIVIPCSLPAIATISLFYAVTYWNTYMHAILYISDSAKWPVQVLLRQIVVLASGI
NYDGATYTDVPPPEVTVKMATIVVATVPVLLVYPFLQKYFAKGALLGSVKG

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=281, Percent_Identity=25.6227758007117, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789860, Length=213, Percent_Identity=27.2300469483568, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32044; Mature: 32044

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRISVGSKIFDVINYVLLGLLALVMIIPFIHVVGSSFATSAEIAETSFLLFPTEFSLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCEEEEEECCCCCC
AYKYIFSTDTILRALLISVTVTVGGTLWSMFLSTLTAYGLSRKDLVGRRFFNFLIVFTIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FNGGMIPTFLVVEQTGLLNSLWALIIPVSINAFNMIILRSFFMNLPAGLEESAKIDGASD
HCCCCCHHHHEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
FGILFRIVIPCSLPAIATISLFYAVTYWNTYMHAILYISDSAKWPVQVLLRQIVVLASGI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCC
NYDGATYTDVPPPEVTVKMATIVVATVPVLLVYPFLQKYFAKGALLGSVKG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCC
>Mature Secondary Structure
MRNRISVGSKIFDVINYVLLGLLALVMIIPFIHVVGSSFATSAEIAETSFLLFPTEFSLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCEEEEEECCCCCC
AYKYIFSTDTILRALLISVTVTVGGTLWSMFLSTLTAYGLSRKDLVGRRFFNFLIVFTIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FNGGMIPTFLVVEQTGLLNSLWALIIPVSINAFNMIILRSFFMNLPAGLEESAKIDGASD
HCCCCCHHHHEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
FGILFRIVIPCSLPAIATISLFYAVTYWNTYMHAILYISDSAKWPVQVLLRQIVVLASGI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCC
NYDGATYTDVPPPEVTVKMATIVVATVPVLLVYPFLQKYFAKGALLGSVKG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]