Click here to switch to the map view.

The map label for this gene is rhgT [H]

Identifier: 23099539

GI number: 23099539

Start: 2114813

End: 2115508

Strand: Reverse

Name: rhgT [H]

Synonym: OB2084

Alternate gene names: 23099539

Gene position: 2115508-2114813 (Counterclockwise)

Preceding gene: 23099540

Following gene: 23099538

Centisome position: 58.27

GC content: 35.34

Gene sequence:

>696_bases
ATGAATCATATAAATTTGTTCCTTGCAGGGGATTCAACAATGGCTACTTATGATGTAAATAGAGCACCACAAATGGGGTG
GGGACAAGTGTTGGATCAATATTTTAATGAAAAAATAAAAATCTGGAATGAAGCTGTGCCAGGCAGGAGTACAAAAACAT
TTATTCAAGAGGGAAGACAAAAACGGATTTGCCAACTTATAAAACCAGGAGACTATTTATTTGTTCAATTTGGACATAAC
GATTCTAAAGCCGACAGTGATCGATATACTGAACCATTTACTACCTATAAACAAAATTTAGAGATATTTATCAGTAATGC
TAGATCTAAAGGAGCTTTCCCGGTTTTATTGACCCCTGTTCAAAGAAGGAATTTTACTATCAAAGGGAAGATACTCGATA
AACATGGTTCTTACCCCGTTGCAATGCGTGAACTTGCTATGGAATTAGCAGTACCTTTGATTGATATTACGGAAAAGAGT
ACCATTTTGCTCGAAAATATCGGTCCGGAATTATCCAAAAAATTATATATGTGGTTGAAACGGGGAGATTATTCTAACTA
CCCTGAAGGTATGGAGGATAATACTCATTTTACAGAATTGGGAGCAAATACGATAGCTCAACTTGTAATAGAAGGAATCA
ATGATTTACGGTTGCCCTTAGCAAAGTTTATAAATAAAGAAGAAATGGGATTGTAG

Upstream 100 bases:

>100_bases
CGCCTTGGTACCAATTTATAGTGAACATCAAGACTTAGCTGTACAAATGGTGATGGAAGCTTTAACAGCCCGATAACGAT
ACTTTCCATTGGAGGAAACT

Downstream 100 bases:

>100_bases
TAGAACGTATAATGTAAATGGATTTGTATGAGGGTAAGGGGTATTCCAATTTAAATAATACGGAAAGAAGGTCACCTCTT
AGTAAATAAAGGACTAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: RGAE [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNHINLFLAGDSTMATYDVNRAPQMGWGQVLDQYFNEKIKIWNEAVPGRSTKTFIQEGRQKRICQLIKPGDYLFVQFGHN
DSKADSDRYTEPFTTYKQNLEIFISNARSKGAFPVLLTPVQRRNFTIKGKILDKHGSYPVAMRELAMELAVPLIDITEKS
TILLENIGPELSKKLYMWLKRGDYSNYPEGMEDNTHFTELGANTIAQLVIEGINDLRLPLAKFINKEEMGL

Sequences:

>Translated_231_residues
MNHINLFLAGDSTMATYDVNRAPQMGWGQVLDQYFNEKIKIWNEAVPGRSTKTFIQEGRQKRICQLIKPGDYLFVQFGHN
DSKADSDRYTEPFTTYKQNLEIFISNARSKGAFPVLLTPVQRRNFTIKGKILDKHGSYPVAMRELAMELAVPLIDITEKS
TILLENIGPELSKKLYMWLKRGDYSNYPEGMEDNTHFTELGANTIAQLVIEGINDLRLPLAKFINKEEMGL
>Mature_231_residues
MNHINLFLAGDSTMATYDVNRAPQMGWGQVLDQYFNEKIKIWNEAVPGRSTKTFIQEGRQKRICQLIKPGDYLFVQFGHN
DSKADSDRYTEPFTTYKQNLEIFISNARSKGAFPVLLTPVQRRNFTIKGKILDKHGSYPVAMRELAMELAVPLIDITEKS
TILLENIGPELSKKLYMWLKRGDYSNYPEGMEDNTHFTELGANTIAQLVIEGINDLRLPLAKFINKEEMGL

Specific function: May play role in the degradation of type I rhamnogalacturonan derived from plant cell walls. This enzyme has a broad substrate specificity, and shows strong preference for glucose pentaacetate, beta-naphthylacetate, and p-nitrophenyl acetate (pNPA). Also

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'GDSL' lipolytic enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 26426; Mature: 26426

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHINLFLAGDSTMATYDVNRAPQMGWGQVLDQYFNEKIKIWNEAVPGRSTKTFIQEGRQ
CCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
KRICQLIKPGDYLFVQFGHNDSKADSDRYTEPFTTYKQNLEIFISNARSKGAFPVLLTPV
HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCEEEEEECCCCCCCCEEEECCC
QRRNFTIKGKILDKHGSYPVAMRELAMELAVPLIDITEKSTILLENIGPELSKKLYMWLK
CCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCEEEEECCCHHHHHHHHHHHH
RGDYSNYPEGMEDNTHFTELGANTIAQLVIEGINDLRLPLAKFINKEEMGL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MNHINLFLAGDSTMATYDVNRAPQMGWGQVLDQYFNEKIKIWNEAVPGRSTKTFIQEGRQ
CCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
KRICQLIKPGDYLFVQFGHNDSKADSDRYTEPFTTYKQNLEIFISNARSKGAFPVLLTPV
HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCEEEEEECCCCCCCCEEEECCC
QRRNFTIKGKILDKHGSYPVAMRELAMELAVPLIDITEKSTILLENIGPELSKKLYMWLK
CCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCEEEEECCCHHHHHHHHHHHH
RGDYSNYPEGMEDNTHFTELGANTIAQLVIEGINDLRLPLAKFINKEEMGL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]