Click here to switch to the map view.

The map label for this gene is fadM [H]

Identifier: 23098805

GI number: 23098805

Start: 1394315

End: 1395313

Strand: Direct

Name: fadM [H]

Synonym: OB1350

Alternate gene names: 23098805

Gene position: 1394315-1395313 (Clockwise)

Preceding gene: 23098804

Following gene: 23098806

Centisome position: 38.41

GC content: 33.93

Gene sequence:

>999_bases
ATGGCAAATCTAACACGAGATTTCTTTATAGGTTTATCAAATAATAAGTTGTTAAACACAAATGCAAAGAAATATGGATT
TCGTTTAGGTGCAGAGAAGTTTGTTGCGGGAACTAATTTTGACAGTATTATCGGAATAATCAAAGATTTGAATAGTGAGG
GAATATCTTGTACACTAGATAACCTCGGAGAGTTTGTGACAGAAAAATCAGAAGCAATTGAAGCAAGAGATGATATCATC
GATATGCTTTATAAGATTCATGAACAACGACTAGATTGTCATGTATCTGTGAAATTAACTCAGCTGGGTTTGGACATTGG
TGATGATTTTTGTATAAATAATATGCATGCAATTTTAAAAGTTGCAAATCGCTTTGAGATTTTTATCAATATTGACATGG
AGAAACATATCCATTATGGTAAAACATTGGAGATTCTAAATGAGCTCCGAAAAGAGTATGACAACGTCGGTACGGTAATA
CAATCATATTTGTATAGTGCGGAGGACGATTTAGCCGCTTTAGAGGATGTACGAATACGTCTTGTGAAAGGTGCCTACAA
AGAAGATGCATCAATTGCTTATCCATCAAAGGAAGATATTGATCGTAATTTTATGGAACTTGCTAAAAAAAGGCTGCTAG
GTAATACATTTACTTCCATTGCAACTCATGATCATAATATTATTGAGGAATTAAAATCTTTTGTTGATGAGCATAATATC
TCTAGGGATATCTTTGAGTTTCAAATGCTTTATGGTTTTCGAACTGAAATGCATAATGAACTGGCACAGGCAGGATATCA
TTTTTGTACGTACATTCCGTTTGGAAGCGATTGGTTTGGTTATTTCATGCGGAGGCTTGCAGAGCGACCGCAGAATATTA
ACTTGGTTTTAAAAGATGTTTTTTATACGAAAGGGAACAAGCTAAAAAAAGAACCAGTTATAGCTGGTGTAGCTGCTCTA
TCGTTGTTGATGTATGTTAATAAAAAAAGGAAAAAATAA

Upstream 100 bases:

>100_bases
TGGGGTTGGGATAGTTTCTTTTGAGTATAGATTATATACTTCGTCCCAACCTCAGTCTTGTATAATAAGCAGTTAGTTTC
TTAAGTAAGGGGATAGAATA

Downstream 100 bases:

>100_bases
ATTTAAGGACAATTGTATTGTTTCTGAAGGGATTGCCCTAAAGTCTCTGGTATTTCCCTTCCCTTCTTAATTCCTTCCTG
TCTCAGCCTTTTTCCATCTT

Product: proline oxidase

Products: NA

Alternate protein names: PRODH 1; Proline oxidase 1 [H]

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MANLTRDFFIGLSNNKLLNTNAKKYGFRLGAEKFVAGTNFDSIIGIIKDLNSEGISCTLDNLGEFVTEKSEAIEARDDII
DMLYKIHEQRLDCHVSVKLTQLGLDIGDDFCINNMHAILKVANRFEIFINIDMEKHIHYGKTLEILNELRKEYDNVGTVI
QSYLYSAEDDLAALEDVRIRLVKGAYKEDASIAYPSKEDIDRNFMELAKKRLLGNTFTSIATHDHNIIEELKSFVDEHNI
SRDIFEFQMLYGFRTEMHNELAQAGYHFCTYIPFGSDWFGYFMRRLAERPQNINLVLKDVFYTKGNKLKKEPVIAGVAAL
SLLMYVNKKRKK

Sequences:

>Translated_332_residues
MANLTRDFFIGLSNNKLLNTNAKKYGFRLGAEKFVAGTNFDSIIGIIKDLNSEGISCTLDNLGEFVTEKSEAIEARDDII
DMLYKIHEQRLDCHVSVKLTQLGLDIGDDFCINNMHAILKVANRFEIFINIDMEKHIHYGKTLEILNELRKEYDNVGTVI
QSYLYSAEDDLAALEDVRIRLVKGAYKEDASIAYPSKEDIDRNFMELAKKRLLGNTFTSIATHDHNIIEELKSFVDEHNI
SRDIFEFQMLYGFRTEMHNELAQAGYHFCTYIPFGSDWFGYFMRRLAERPQNINLVLKDVFYTKGNKLKKEPVIAGVAAL
SLLMYVNKKRKK
>Mature_331_residues
ANLTRDFFIGLSNNKLLNTNAKKYGFRLGAEKFVAGTNFDSIIGIIKDLNSEGISCTLDNLGEFVTEKSEAIEARDDIID
MLYKIHEQRLDCHVSVKLTQLGLDIGDDFCINNMHAILKVANRFEIFINIDMEKHIHYGKTLEILNELRKEYDNVGTVIQ
SYLYSAEDDLAALEDVRIRLVKGAYKEDASIAYPSKEDIDRNFMELAKKRLLGNTFTSIATHDHNIIEELKSFVDEHNIS
RDIFEFQMLYGFRTEMHNELAQAGYHFCTYIPFGSDWFGYFMRRLAERPQNINLVLKDVFYTKGNKLKKEPVIAGVAALS
LLMYVNKKRKK

Specific function: Catalyzes the oxidation of L-proline to delta-1- pyrroline-5-carboxylate (P5C) [H]

COG id: COG0506

COG function: function code E; Proline dehydrogenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline oxidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015590
- InterPro:   IPR002872
- InterPro:   IPR008219 [H]

Pfam domain/function: PF01619 Pro_dh [H]

EC number: =1.5.99.8 [H]

Molecular weight: Translated: 38227; Mature: 38096

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLTRDFFIGLSNNKLLNTNAKKYGFRLGAEKFVAGTNFDSIIGIIKDLNSEGISCTLD
CCCCCCHHEEECCCCEEECCCHHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCCCCEEEHH
NLGEFVTEKSEAIEARDDIIDMLYKIHEQRLDCHVSVKLTQLGLDIGDDFCINNMHAILK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHHHHHHH
VANRFEIFINIDMEKHIHYGKTLEILNELRKEYDNVGTVIQSYLYSAEDDLAALEDVRIR
HHHHEEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LVKGAYKEDASIAYPSKEDIDRNFMELAKKRLLGNTFTSIATHDHNIIEELKSFVDEHNI
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCCC
SRDIFEFQMLYGFRTEMHNELAQAGYHFCTYIPFGSDWFGYFMRRLAERPQNINLVLKDV
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEHH
FYTKGNKLKKEPVIAGVAALSLLMYVNKKRKK
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANLTRDFFIGLSNNKLLNTNAKKYGFRLGAEKFVAGTNFDSIIGIIKDLNSEGISCTLD
CCCCCHHEEECCCCEEECCCHHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCCCCEEEHH
NLGEFVTEKSEAIEARDDIIDMLYKIHEQRLDCHVSVKLTQLGLDIGDDFCINNMHAILK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHHHHHHH
VANRFEIFINIDMEKHIHYGKTLEILNELRKEYDNVGTVIQSYLYSAEDDLAALEDVRIR
HHHHEEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LVKGAYKEDASIAYPSKEDIDRNFMELAKKRLLGNTFTSIATHDHNIIEELKSFVDEHNI
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCCC
SRDIFEFQMLYGFRTEMHNELAQAGYHFCTYIPFGSDWFGYFMRRLAERPQNINLVLKDV
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEHH
FYTKGNKLKKEPVIAGVAALSLLMYVNKKRKK
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA