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The map label for this gene is ybbD [H]

Identifier: 23098754

GI number: 23098754

Start: 1340701

End: 1342707

Strand: Direct

Name: ybbD [H]

Synonym: OB1299

Alternate gene names: 23098754

Gene position: 1340701-1342707 (Clockwise)

Preceding gene: 23098743

Following gene: 23098755

Centisome position: 36.93

GC content: 38.27

Gene sequence:

>2007_bases
ATGGTCCGTAAATTCTTTCTATTATTTCTATCAATCGTATTAACCTTCACGACTTTACCGATGACAGCGTTTGCTGAAGA
AGAGGATGAAATACAGACGATGATTAATAATATGTCTGTCGAAGAGAAAGTAGGGCAGTTGTTTATTGTCCACGTATATG
GACAAACTCCAACAGATCCAAATTATGAATCTACAAATCTTACAAATAACCGTGGCGGTAAGAATTTTCAAGAGGTAATT
GAAAACTACCATATTGGAGGAATCATTTATTTCAATTGGTCACAAAACATCGGTACCCCATTAGAAAAACAACAAGTGCA
TGATTTATCAAATGGATTACAAGATATCGCTCTGGAACAAGATTCAGAAATACCGCTATTTGTTTCGACAGACCAAGAAG
GTGGCATCGTACAGCGAGTGATTTCTCCAGGTACGGTATTCCCAGGTAATATGGCAATTGGAGCTACAAATTCCATAGAT
TTTGCCTCCAGAAGTGGTGAAATTCTAGGAAAAGAATTGGATGCTTTAGGAATTAATATGAATTTTGCTCCAACTGTAGA
TGTTAATCTTAATCCTGCTAATCCAGTCATAGGTGTCCGCTCTTTTGGTGAGGATCCTGACATGGTATCACAATTGGGAG
CAGCGCAAATTACAGCCTATGAAGATCAGGATGTCGTAGCTACGGCAAAACATTTTCCAGGACATGGTGATACAGATGTA
GATTCTCATTATGGTCTTCCTGTTATAGATCATGATTTAGAGACTTTGCATGAAGTTGACTTACCTCCATTCCAAGCAGC
AATTGACGCTGGCGTAGGGGCAATTATGACAGGGCATATTGTTGTTCCAGCATTAGACGATTCTGGAATGCCTGCAACAT
TATCCTATCCGATATTAACGGAGTTACTACGAGAAGATATGGGATTTGAAGGGTTAATTATCACGGATAGCTTAGGAATG
TCTGGAGCAAATGTTGTTCCACCGGAACGTGTAGCAGTCGAATCTTTTCTGGCTGGAGCTGATATTTTACTAAATCCCCC
AGACGTGCCTGTAGCATATGAGGGTGTTATGGATGCTGTAGAGTCAGGGGAGATTAGTGAAGAACGATTAGATGAATCGG
TATATCGAATTCTTTCTGCAAAAATGGAATATGGGTTGTTTGAAGATCCTTATACAGAGAGTAATAAATTAGATGTCATT
GGTTCAGAGTCACATCTTAAAACAGCAAGTGAAATTGCGGAGAAAAGTATCACGTTACTAAAGAATAATGGGGATGTCTT
ACCTCTTCAAGAAGATGAAGAAGTGTTTATAACAGGTCCTCAAGCTGCATATCCGAATAAAATTGCCAATTTACTAGGAG
AACAAGATATTCAGAGTACACATTATAGTACGGCAACTAGTCCTACAGATAACCAAATTGCAGAAGCAGTGGATAGAGCA
GAATCGGCAGATAAAGTTGTTGTTACAACCTATACTGCTAATACAAATGAACGACAACAAATGTTAGTGGAAGCATTGCA
AGAATTAGACAAACCAATTGTTGTTTCCGCTCATCGAAATCCATATGATTTAATGGCATTTCCAAATGTCGATGCTTATC
TTAACTCGTATAGCTATTTAGATGTTTCGCTAGACGCTGTTGCTGCCTCATTAATTGGGGATATTAATCCTTCTGGAAAA
TTACCAGTGACCATACCAGATGTAAATGAAATCGGGGATGGTGTTGATTATGTTGGTGCAGAAAGTGCTAATGATATTAA
ATCACTAGTAGATGAACTCCATACAAATGAGGAATTAAATTCAGATGAAGCGAAGAAGGCGTTTGAAAGACATTTAACTG
CAGTGGCACAGTTTGAAAAGACAAATCAATCAGCCAAAGTTATTAAACATCTGGAAAGCTTTCAAACACTAATAGATCAC
TACAACGAACAAGAGGCACTTAGTAAAAAGGCGTTCAACTACCTAGAAACTACTAGTCTTCGTTTGATAGATCAATGGGA
AGACTAA

Upstream 100 bases:

>100_bases
TTACAAAAAGTACATTACTTCAATTTCTGTTTGAGCGAAGGAGGGAGGAATGACGAATTTTGAAAGTGCTTTTCATATCA
AATAAAGGGGAGGCATGCAG

Downstream 100 bases:

>100_bases
AATAATGCCAAGCAGTAAAGGAAGAAAAATATGTTGTTCCAAACATTAATAAAATCATCTATTCTCTTTTGCTTAGTACT
CTTGACACTATTACAAATTC

Product: beta-N-acetylglucosaminidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MVRKFFLLFLSIVLTFTTLPMTAFAEEEDEIQTMINNMSVEEKVGQLFIVHVYGQTPTDPNYESTNLTNNRGGKNFQEVI
ENYHIGGIIYFNWSQNIGTPLEKQQVHDLSNGLQDIALEQDSEIPLFVSTDQEGGIVQRVISPGTVFPGNMAIGATNSID
FASRSGEILGKELDALGINMNFAPTVDVNLNPANPVIGVRSFGEDPDMVSQLGAAQITAYEDQDVVATAKHFPGHGDTDV
DSHYGLPVIDHDLETLHEVDLPPFQAAIDAGVGAIMTGHIVVPALDDSGMPATLSYPILTELLREDMGFEGLIITDSLGM
SGANVVPPERVAVESFLAGADILLNPPDVPVAYEGVMDAVESGEISEERLDESVYRILSAKMEYGLFEDPYTESNKLDVI
GSESHLKTASEIAEKSITLLKNNGDVLPLQEDEEVFITGPQAAYPNKIANLLGEQDIQSTHYSTATSPTDNQIAEAVDRA
ESADKVVVTTYTANTNERQQMLVEALQELDKPIVVSAHRNPYDLMAFPNVDAYLNSYSYLDVSLDAVAASLIGDINPSGK
LPVTIPDVNEIGDGVDYVGAESANDIKSLVDELHTNEELNSDEAKKAFERHLTAVAQFEKTNQSAKVIKHLESFQTLIDH
YNEQEALSKKAFNYLETTSLRLIDQWED

Sequences:

>Translated_668_residues
MVRKFFLLFLSIVLTFTTLPMTAFAEEEDEIQTMINNMSVEEKVGQLFIVHVYGQTPTDPNYESTNLTNNRGGKNFQEVI
ENYHIGGIIYFNWSQNIGTPLEKQQVHDLSNGLQDIALEQDSEIPLFVSTDQEGGIVQRVISPGTVFPGNMAIGATNSID
FASRSGEILGKELDALGINMNFAPTVDVNLNPANPVIGVRSFGEDPDMVSQLGAAQITAYEDQDVVATAKHFPGHGDTDV
DSHYGLPVIDHDLETLHEVDLPPFQAAIDAGVGAIMTGHIVVPALDDSGMPATLSYPILTELLREDMGFEGLIITDSLGM
SGANVVPPERVAVESFLAGADILLNPPDVPVAYEGVMDAVESGEISEERLDESVYRILSAKMEYGLFEDPYTESNKLDVI
GSESHLKTASEIAEKSITLLKNNGDVLPLQEDEEVFITGPQAAYPNKIANLLGEQDIQSTHYSTATSPTDNQIAEAVDRA
ESADKVVVTTYTANTNERQQMLVEALQELDKPIVVSAHRNPYDLMAFPNVDAYLNSYSYLDVSLDAVAASLIGDINPSGK
LPVTIPDVNEIGDGVDYVGAESANDIKSLVDELHTNEELNSDEAKKAFERHLTAVAQFEKTNQSAKVIKHLESFQTLIDH
YNEQEALSKKAFNYLETTSLRLIDQWED
>Mature_668_residues
MVRKFFLLFLSIVLTFTTLPMTAFAEEEDEIQTMINNMSVEEKVGQLFIVHVYGQTPTDPNYESTNLTNNRGGKNFQEVI
ENYHIGGIIYFNWSQNIGTPLEKQQVHDLSNGLQDIALEQDSEIPLFVSTDQEGGIVQRVISPGTVFPGNMAIGATNSID
FASRSGEILGKELDALGINMNFAPTVDVNLNPANPVIGVRSFGEDPDMVSQLGAAQITAYEDQDVVATAKHFPGHGDTDV
DSHYGLPVIDHDLETLHEVDLPPFQAAIDAGVGAIMTGHIVVPALDDSGMPATLSYPILTELLREDMGFEGLIITDSLGM
SGANVVPPERVAVESFLAGADILLNPPDVPVAYEGVMDAVESGEISEERLDESVYRILSAKMEYGLFEDPYTESNKLDVI
GSESHLKTASEIAEKSITLLKNNGDVLPLQEDEEVFITGPQAAYPNKIANLLGEQDIQSTHYSTATSPTDNQIAEAVDRA
ESADKVVVTTYTANTNERQQMLVEALQELDKPIVVSAHRNPYDLMAFPNVDAYLNSYSYLDVSLDAVAASLIGDINPSGK
LPVTIPDVNEIGDGVDYVGAESANDIKSLVDELHTNEELNSDEAKKAFERHLTAVAQFEKTNQSAKVIKHLESFQTLIDH
YNEQEALSKKAFNYLETTSLRLIDQWED

Specific function: Unknown

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788453, Length=674, Percent_Identity=25.8160237388724, Blast_Score=155, Evalue=8e-39,
Organism=Escherichia coli, GI1787350, Length=325, Percent_Identity=27.6923076923077, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 73048; Mature: 73048

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKFFLLFLSIVLTFTTLPMTAFAEEEDEIQTMINNMSVEEKVGQLFIVHVYGQTPTDP
CHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCHHHHCCCEEEEEEECCCCCCC
NYESTNLTNNRGGKNFQEVIENYHIGGIIYFNWSQNIGTPLEKQQVHDLSNGLQDIALEQ
CCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCC
DSEIPLFVSTDQEGGIVQRVISPGTVFPGNMAIGATNSIDFASRSGEILGKELDALGINM
CCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHEECCC
NFAPTVDVNLNPANPVIGVRSFGEDPDMVSQLGAAQITAYEDQDVVATAKHFPGHGDTDV
CCCCEEEEECCCCCCEEEECCCCCCHHHHHHCCCCEEEEECCCCCEEHHHHCCCCCCCCC
DSHYGLPVIDHDLETLHEVDLPPFQAAIDAGVGAIMTGHIVVPALDDSGMPATLSYPILT
CCCCCCCEECCCHHHHHHCCCCHHHHHHHCCCCCEEECCEEEEEECCCCCCCEECHHHHH
ELLREDMGFEGLIITDSLGMSGANVVPPERVAVESFLAGADILLNPPDVPVAYEGVMDAV
HHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEHHHHHHHH
ESGEISEERLDESVYRILSAKMEYGLFEDPYTESNKLDVIGSESHLKTASEIAEKSITLL
HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHEEEE
KNNGDVLPLQEDEEVFITGPQAAYPNKIANLLGEQDIQSTHYSTATSPTDNQIAEAVDRA
ECCCCEECCCCCCEEEEECCCCCCHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHH
ESADKVVVTTYTANTNERQQMLVEALQELDKPIVVSAHRNPYDLMAFPNVDAYLNSYSYL
CCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHHHCCCEEE
DVSLDAVAASLIGDINPSGKLPVTIPDVNEIGDGVDYVGAESANDIKSLVDELHTNEELN
EEHHHHHHHHHHHCCCCCCCCCEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
SDEAKKAFERHLTAVAQFEKTNQSAKVIKHLESFQTLIDHYNEQEALSKKAFNYLETTSL
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHE
RLIDQWED
EEEECCCC
>Mature Secondary Structure
MVRKFFLLFLSIVLTFTTLPMTAFAEEEDEIQTMINNMSVEEKVGQLFIVHVYGQTPTDP
CHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCHHHHCCCEEEEEEECCCCCCC
NYESTNLTNNRGGKNFQEVIENYHIGGIIYFNWSQNIGTPLEKQQVHDLSNGLQDIALEQ
CCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCC
DSEIPLFVSTDQEGGIVQRVISPGTVFPGNMAIGATNSIDFASRSGEILGKELDALGINM
CCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHEECCC
NFAPTVDVNLNPANPVIGVRSFGEDPDMVSQLGAAQITAYEDQDVVATAKHFPGHGDTDV
CCCCEEEEECCCCCCEEEECCCCCCHHHHHHCCCCEEEEECCCCCEEHHHHCCCCCCCCC
DSHYGLPVIDHDLETLHEVDLPPFQAAIDAGVGAIMTGHIVVPALDDSGMPATLSYPILT
CCCCCCCEECCCHHHHHHCCCCHHHHHHHCCCCCEEECCEEEEEECCCCCCCEECHHHHH
ELLREDMGFEGLIITDSLGMSGANVVPPERVAVESFLAGADILLNPPDVPVAYEGVMDAV
HHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEHHHHHHHH
ESGEISEERLDESVYRILSAKMEYGLFEDPYTESNKLDVIGSESHLKTASEIAEKSITLL
HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHEEEE
KNNGDVLPLQEDEEVFITGPQAAYPNKIANLLGEQDIQSTHYSTATSPTDNQIAEAVDRA
ECCCCEECCCCCCEEEEECCCCCCHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHH
ESADKVVVTTYTANTNERQQMLVEALQELDKPIVVSAHRNPYDLMAFPNVDAYLNSYSYL
CCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHHHCCCEEE
DVSLDAVAASLIGDINPSGKLPVTIPDVNEIGDGVDYVGAESANDIKSLVDELHTNEELN
EEHHHHHHHHHHHCCCCCCCCCEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
SDEAKKAFERHLTAVAQFEKTNQSAKVIKHLESFQTLIDHYNEQEALSKKAFNYLETTSL
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHE
RLIDQWED
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]