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The map label for this gene is 23098703

Identifier: 23098703

GI number: 23098703

Start: 1295511

End: 1296002

Strand: Direct

Name: 23098703

Synonym: OB1248

Alternate gene names: NA

Gene position: 1295511-1296002 (Clockwise)

Preceding gene: 23098702

Following gene: 23098704

Centisome position: 35.68

GC content: 29.27

Gene sequence:

>492_bases
ATGTCTAAAATGAACCCATTCGATCTTATTGAGGAAATATATAATGAGCATTATGTGTATTTAAGAAACTTTTTAATAGG
CTTAACCAAAAGTGATGAACTCGCTGATGATATTATCCAGGAATTATTTACAAAAATCTTGGTTTCACCTTCGAAGATTA
CAGAAGTTAATTATATGAAAAGTTGGTTATTAAGAGGGGCAAAAAATACACTTCTTGACTATTATAAAAAAAAGAAACCT
GAGTTGTTGAATAAAGAGAACGTCATTGAAACGTTGTTAGTTGATAATTACACACCAGAAATAAGTACAACAATTAACAA
TGAATTAGAAACACTGTTAGGCAAGTTGTCTACTACCGATAAAGCAATTATTTTCGCTAAAGAATATTATGGATATGATT
ATCAAGAAATTAGTGAGCTTTTAAATATGCCAGTATCCACTTTAAAATCAAAGGTGTTCAGGATTAGGAAAAGAATGATT
AAAGAGAGGTAA

Upstream 100 bases:

>100_bases
CCTTAATCAATATTTTCTCGCATCATAAAGTATATAATGCAACTTTACTTAGAGAGAAATCGTCTTACTTGTAAGGGAAA
TGATTCAGGGAGATTAAAAT

Downstream 100 bases:

>100_bases
TTCAATGGATGCTAATACCAAAATTCATCTGTTATCAAAGGAGTTAATTCCAGTTATCAATGACATTGATAATAAGCCTA
AACAGATAATTCTAGATCAT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKMNPFDLIEEIYNEHYVYLRNFLIGLTKSDELADDIIQELFTKILVSPSKITEVNYMKSWLLRGAKNTLLDYYKKKKP
ELLNKENVIETLLVDNYTPEISTTINNELETLLGKLSTTDKAIIFAKEYYGYDYQEISELLNMPVSTLKSKVFRIRKRMI
KER

Sequences:

>Translated_163_residues
MSKMNPFDLIEEIYNEHYVYLRNFLIGLTKSDELADDIIQELFTKILVSPSKITEVNYMKSWLLRGAKNTLLDYYKKKKP
ELLNKENVIETLLVDNYTPEISTTINNELETLLGKLSTTDKAIIFAKEYYGYDYQEISELLNMPVSTLKSKVFRIRKRMI
KER
>Mature_162_residues
SKMNPFDLIEEIYNEHYVYLRNFLIGLTKSDELADDIIQELFTKILVSPSKITEVNYMKSWLLRGAKNTLLDYYKKKKPE
LLNKENVIETLLVDNYTPEISTTINNELETLLGKLSTTDKAIIFAKEYYGYDYQEISELLNMPVSTLKSKVFRIRKRMIK
ER

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19234; Mature: 19102

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKMNPFDLIEEIYNEHYVYLRNFLIGLTKSDELADDIIQELFTKILVSPSKITEVNYMK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
SWLLRGAKNTLLDYYKKKKPELLNKENVIETLLVDNYTPEISTTINNELETLLGKLSTTD
HHHHHCHHHHHHHHHHHCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
KAIIFAKEYYGYDYQEISELLNMPVSTLKSKVFRIRKRMIKER
HHHEEEHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKMNPFDLIEEIYNEHYVYLRNFLIGLTKSDELADDIIQELFTKILVSPSKITEVNYMK
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
SWLLRGAKNTLLDYYKKKKPELLNKENVIETLLVDNYTPEISTTINNELETLLGKLSTTD
HHHHHCHHHHHHHHHHHCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
KAIIFAKEYYGYDYQEISELLNMPVSTLKSKVFRIRKRMIKER
HHHEEEHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA