Definition | Oceanobacillus iheyensis HTE831, complete genome. |
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Accession | NC_004193 |
Length | 3,630,528 |
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The map label for this gene is pcrA [H]
Identifier: 23098214
GI number: 23098214
Start: 808280
End: 810505
Strand: Direct
Name: pcrA [H]
Synonym: OB0759
Alternate gene names: 23098214
Gene position: 808280-810505 (Clockwise)
Preceding gene: 23098213
Following gene: 23098215
Centisome position: 22.26
GC content: 37.2
Gene sequence:
>2226_bases ATGAATCAATCATTGGAAAGTATGATCAATACGTTAAATAAACAACAGCAAGAGGCTGTGCGACATACAGAAGGACCATT ATTAATTATGGCAGGAGCAGGAAGTGGAAAAACACGTGTGTTAACCCATCGAATCGCATATTTAATGGGAGAAAAAGATG TATCGCCACGAAATATATTGGCCATTACATTTACGAATAAAGCCGCACGAGAAATGAAAGAACGTGTGAGCAAATTAGTC GGACCACAGGGAGAATATATGTGGGTATCCACCTTTCACTCCATGTGCGTCCGTATTTTGCGTCGAGACATAGATCGGAT TGGATATTCAACGAATTTTTCTATCTTAGATAGTAGTGATCAATTATCCGTAATCAAGCAAGTACTAAAAAATTTGAATA TAGACCCAAAAAAATTCGATCCACGTGCTATGCTGGGACAAATAAGTACAGCAAAAAACGAATTAATTACTGAAGAAGAA TATTCGAAAAACGCTGGGGATTTCTTTAGTCGTCAAGTGGCTCAAGTATATGAAGGATATCAAAAAATGCTCCGCAAAAA TCAATCACTCGATTTTGATGACTTAATAATGCAAACCATTCATTTATTCCAACGTATACCAGAAGTGTTGGAATATTATC AGCGTCGTTTTCAATATATTCATGTGGACGAGTATCAAGATACCAACCATGCACAATATTATTTAGTGAAACAATTAGCT AGCAGATTTCAAAACCTATGTGTAGTGGGAGATTCTGACCAGTCGATATATCGTTGGAGAGGTGCGGATATTGGTAATAT CTTAACTTTTGAAAAAGACTATCCTTCTGCTCGTACGGTTTTATTAGAGCAAAATTACCGATCTACAAAATCTATATTAC AAGCTGCTAATCAAGTGATCTCTAATAACTCTGGCAGAAAGCCGAAAAACTTATGGACGGATAATATTGATGGGAAAAAT CTAAACTATTATCAAGGCGGAACAGAACAAGAAGAGGCTCTCTTTGTTACAGATAAGATTCAGCAGTTAATAAGAGAGAA TGAGTATAAACCAAGTGATGTTGCCATTTTATACCGAACAAATGCTCAATCACGTGCGATAGAGGATACTTTATTAAAAT CAGGTATTAATTATCAAATGGTTGGAGGCATGAAGTTCTACGATCGTAAAGAGATTAAGGACATGATTGCTTATCTAAGA TTAATTACAAATCCAGATGATGACATTAGTTTTGTACGTGTAGTGAATGAACCGAAACGTGGTGTTGGTAAGACGTCAGT TGAACGTTTACAAGCGTATGCTGGCGAGCATGATATTTCATTATATGAAGCGGTAAAAGAAGTTGATTTTACAGGAGTAT CGAAAAAAGCAGCGAATGCGCTAGCGGGCTTTGAAAGTCTTATCCGTACTTTATCGCAACAACAAGAATTCTTAACGGCA ACAGACATGGTAGAAGCTATATTGGAACGAACGGGCTATGAAGAAATGTTAAAGAATGAGCGCACTATCGAGGCACAAAG TCGCCTAGAAAACTTAGAAGAATTCATGACAGTTACAAAAGATTTCGAAAAAGCAAGCGAAGATAAAACACTAATCGCCT TCTTAACGGACCTTGCGTTAGTCGCGGATATTGATCGAGTGGACGAAGAAGATCCAGATCATAATGAAAAAATCACTTTA ATGACATTACACGCCGCAAAAGGATTAGAATTTCCTGTTGTATTCTTAATTGGAATGGAAGAAAATGTCTTCCCGCATAG TCGATCTATTATGGATGAAGATGAAATGGAAGAGGAGAGAAGACTTGCTTATGTAGGGATTACCCGTGCAGAAAAAGAAT TGTATGTAACCCATGCAAAAATGCGTACACTGTATGGTAGAACGAATATGAATCCAATAAGCAGATTTATTAACGAAATA CCAAAAGAATTAATTGATGGTTTAGAAGAAATAAGTAAACCGATGTTTGGCGCAAAATCTCTCGAACGTTCCCCACAACG ACCAGCTCCAAAGAAACGACGTGCTGAAAAAATGCAATCTTCTACAGGTGCTGAAAGTAAGGAATGGGCTGTTGGTGAAA AAGCAAACCATAAAAAGTGGGGCATAGGAACGGTTGTGAAAGTACAAGGCGAAGGAGAAAAAATGGAATTAGATATCGCT TTTCCTGCACCTATAGGTATTAAACGGTTATTAGCTAAATTTGCACCAATTACGAAGGAAGAATAG
Upstream 100 bases:
>100_bases CAATCATTGTAGGCAATAGCATCTATACTAATATAAATGAAGCATTAAAAACAGTAGAGGCAGTTAAAGGGAATTAAACA GTAGTAAGGACGGTGCACGT
Downstream 100 bases:
>100_bases GGGCAACGAAAATGAATAAAGAACAAGTAAGTAAGAAGATAGAATCCTTAATTGAATTGTTAAATCAATATGGATATGAA TATTATGTGTTGGATAATCC
Product: ATP-dependent DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 741; Mature: 741
Protein sequence:
>741_residues MNQSLESMINTLNKQQQEAVRHTEGPLLIMAGAGSGKTRVLTHRIAYLMGEKDVSPRNILAITFTNKAAREMKERVSKLV GPQGEYMWVSTFHSMCVRILRRDIDRIGYSTNFSILDSSDQLSVIKQVLKNLNIDPKKFDPRAMLGQISTAKNELITEEE YSKNAGDFFSRQVAQVYEGYQKMLRKNQSLDFDDLIMQTIHLFQRIPEVLEYYQRRFQYIHVDEYQDTNHAQYYLVKQLA SRFQNLCVVGDSDQSIYRWRGADIGNILTFEKDYPSARTVLLEQNYRSTKSILQAANQVISNNSGRKPKNLWTDNIDGKN LNYYQGGTEQEEALFVTDKIQQLIRENEYKPSDVAILYRTNAQSRAIEDTLLKSGINYQMVGGMKFYDRKEIKDMIAYLR LITNPDDDISFVRVVNEPKRGVGKTSVERLQAYAGEHDISLYEAVKEVDFTGVSKKAANALAGFESLIRTLSQQQEFLTA TDMVEAILERTGYEEMLKNERTIEAQSRLENLEEFMTVTKDFEKASEDKTLIAFLTDLALVADIDRVDEEDPDHNEKITL MTLHAAKGLEFPVVFLIGMEENVFPHSRSIMDEDEMEEERRLAYVGITRAEKELYVTHAKMRTLYGRTNMNPISRFINEI PKELIDGLEEISKPMFGAKSLERSPQRPAPKKRRAEKMQSSTGAESKEWAVGEKANHKKWGIGTVVKVQGEGEKMELDIA FPAPIGIKRLLAKFAPITKEE
Sequences:
>Translated_741_residues MNQSLESMINTLNKQQQEAVRHTEGPLLIMAGAGSGKTRVLTHRIAYLMGEKDVSPRNILAITFTNKAAREMKERVSKLV GPQGEYMWVSTFHSMCVRILRRDIDRIGYSTNFSILDSSDQLSVIKQVLKNLNIDPKKFDPRAMLGQISTAKNELITEEE YSKNAGDFFSRQVAQVYEGYQKMLRKNQSLDFDDLIMQTIHLFQRIPEVLEYYQRRFQYIHVDEYQDTNHAQYYLVKQLA SRFQNLCVVGDSDQSIYRWRGADIGNILTFEKDYPSARTVLLEQNYRSTKSILQAANQVISNNSGRKPKNLWTDNIDGKN LNYYQGGTEQEEALFVTDKIQQLIRENEYKPSDVAILYRTNAQSRAIEDTLLKSGINYQMVGGMKFYDRKEIKDMIAYLR LITNPDDDISFVRVVNEPKRGVGKTSVERLQAYAGEHDISLYEAVKEVDFTGVSKKAANALAGFESLIRTLSQQQEFLTA TDMVEAILERTGYEEMLKNERTIEAQSRLENLEEFMTVTKDFEKASEDKTLIAFLTDLALVADIDRVDEEDPDHNEKITL MTLHAAKGLEFPVVFLIGMEENVFPHSRSIMDEDEMEEERRLAYVGITRAEKELYVTHAKMRTLYGRTNMNPISRFINEI PKELIDGLEEISKPMFGAKSLERSPQRPAPKKRRAEKMQSSTGAESKEWAVGEKANHKKWGIGTVVKVQGEGEKMELDIA FPAPIGIKRLLAKFAPITKEE >Mature_741_residues MNQSLESMINTLNKQQQEAVRHTEGPLLIMAGAGSGKTRVLTHRIAYLMGEKDVSPRNILAITFTNKAAREMKERVSKLV GPQGEYMWVSTFHSMCVRILRRDIDRIGYSTNFSILDSSDQLSVIKQVLKNLNIDPKKFDPRAMLGQISTAKNELITEEE YSKNAGDFFSRQVAQVYEGYQKMLRKNQSLDFDDLIMQTIHLFQRIPEVLEYYQRRFQYIHVDEYQDTNHAQYYLVKQLA SRFQNLCVVGDSDQSIYRWRGADIGNILTFEKDYPSARTVLLEQNYRSTKSILQAANQVISNNSGRKPKNLWTDNIDGKN LNYYQGGTEQEEALFVTDKIQQLIRENEYKPSDVAILYRTNAQSRAIEDTLLKSGINYQMVGGMKFYDRKEIKDMIAYLR LITNPDDDISFVRVVNEPKRGVGKTSVERLQAYAGEHDISLYEAVKEVDFTGVSKKAANALAGFESLIRTLSQQQEFLTA TDMVEAILERTGYEEMLKNERTIEAQSRLENLEEFMTVTKDFEKASEDKTLIAFLTDLALVADIDRVDEEDPDHNEKITL MTLHAAKGLEFPVVFLIGMEENVFPHSRSIMDEDEMEEERRLAYVGITRAEKELYVTHAKMRTLYGRTNMNPISRFINEI PKELIDGLEEISKPMFGAKSLERSPQRPAPKKRRAEKMQSSTGAESKEWAVGEKANHKKWGIGTVVKVQGEGEKMELDIA FPAPIGIKRLLAKFAPITKEE
Specific function: DNA helicase used for plasmid rolling-circle replication and also involved in UV repair [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=733, Percent_Identity=40.3819918144611, Blast_Score=550, Evalue=1e-157, Organism=Escherichia coli, GI48994965, Length=644, Percent_Identity=39.9068322981366, Blast_Score=428, Evalue=1e-121, Organism=Escherichia coli, GI1787196, Length=345, Percent_Identity=26.9565217391304, Blast_Score=104, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6322369, Length=740, Percent_Identity=28.6486486486486, Blast_Score=233, Evalue=8e-62, Organism=Saccharomyces cerevisiae, GI6324477, Length=682, Percent_Identity=23.1671554252199, Blast_Score=119, Evalue=1e-27,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 84901; Mature: 84901
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQSLESMINTLNKQQQEAVRHTEGPLLIMAGAGSGKTRVLTHRIAYLMGEKDVSPRNIL CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE AITFTNKAAREMKERVSKLVGPQGEYMWVSTFHSMCVRILRRDIDRIGYSTNFSILDSSD EEEECCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCH QLSVIKQVLKNLNIDPKKFDPRAMLGQISTAKNELITEEEYSKNAGDFFSRQVAQVYEGY HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHH QKMLRKNQSLDFDDLIMQTIHLFQRIPEVLEYYQRRFQYIHVDEYQDTNHAQYYLVKQLA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHH SRFQNLCVVGDSDQSIYRWRGADIGNILTFEKDYPSARTVLLEQNYRSTKSILQAANQVI HHHHCEEEECCCCCCEEEECCCCCCCEEEECCCCCCHHEEEECCCCHHHHHHHHHHHHHH SNNSGRKPKNLWTDNIDGKNLNYYQGGTEQEEALFVTDKIQQLIRENEYKPSDVAILYRT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC NAQSRAIEDTLLKSGINYQMVGGMKFYDRKEIKDMIAYLRLITNPDDDISFVRVVNEPKR CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC GVGKTSVERLQAYAGEHDISLYEAVKEVDFTGVSKKAANALAGFESLIRTLSQQQEFLTA CCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TDMVEAILERTGYEEMLKNERTIEAQSRLENLEEFMTVTKDFEKASEDKTLIAFLTDLAL HHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH VADIDRVDEEDPDHNEKITLMTLHAAKGLEFPVVFLIGMEENVFPHSRSIMDEDEMEEER HHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH RLAYVGITRAEKELYVTHAKMRTLYGRTNMNPISRFINEIPKELIDGLEEISKPMFGAKS CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LERSPQRPAPKKRRAEKMQSSTGAESKEWAVGEKANHKKWGIGTVVKVQGEGEKMELDIA HHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE FPAPIGIKRLLAKFAPITKEE CCCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MNQSLESMINTLNKQQQEAVRHTEGPLLIMAGAGSGKTRVLTHRIAYLMGEKDVSPRNIL CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE AITFTNKAAREMKERVSKLVGPQGEYMWVSTFHSMCVRILRRDIDRIGYSTNFSILDSSD EEEECCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCH QLSVIKQVLKNLNIDPKKFDPRAMLGQISTAKNELITEEEYSKNAGDFFSRQVAQVYEGY HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHH QKMLRKNQSLDFDDLIMQTIHLFQRIPEVLEYYQRRFQYIHVDEYQDTNHAQYYLVKQLA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHH SRFQNLCVVGDSDQSIYRWRGADIGNILTFEKDYPSARTVLLEQNYRSTKSILQAANQVI HHHHCEEEECCCCCCEEEECCCCCCCEEEECCCCCCHHEEEECCCCHHHHHHHHHHHHHH SNNSGRKPKNLWTDNIDGKNLNYYQGGTEQEEALFVTDKIQQLIRENEYKPSDVAILYRT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC NAQSRAIEDTLLKSGINYQMVGGMKFYDRKEIKDMIAYLRLITNPDDDISFVRVVNEPKR CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC GVGKTSVERLQAYAGEHDISLYEAVKEVDFTGVSKKAANALAGFESLIRTLSQQQEFLTA CCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TDMVEAILERTGYEEMLKNERTIEAQSRLENLEEFMTVTKDFEKASEDKTLIAFLTDLAL HHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH VADIDRVDEEDPDHNEKITLMTLHAAKGLEFPVVFLIGMEENVFPHSRSIMDEDEMEEER HHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH RLAYVGITRAEKELYVTHAKMRTLYGRTNMNPISRFINEIPKELIDGLEEISKPMFGAKS CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH LERSPQRPAPKKRRAEKMQSSTGAESKEWAVGEKANHKKWGIGTVVKVQGEGEKMELDIA HHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE FPAPIGIKRLLAKFAPITKEE CCCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9701819; 9384377 [H]