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The map label for this gene is rhaA

Identifier: 23097951

GI number: 23097951

Start: 527343

End: 528596

Strand: Direct

Name: rhaA

Synonym: OB0496

Alternate gene names: 23097951

Gene position: 527343-528596 (Clockwise)

Preceding gene: 23097950

Following gene: 23097952

Centisome position: 14.53

GC content: 36.84

Gene sequence:

>1254_bases
ATGGACGTCAAACAAAATTATGAACAAGCGAAAAAACAATATGAAAAATGGGGAGTTAATGTTGAGGATGCGTTAGAGAA
GCTAAAACAAATTCCGATTTCGATTCATTGTTGGCAAGGGGATGATGTGACAGGATTTGAAGTCAATCAACAGGAGTTAT
CGGGGGGGATCGATGTAACGGGAAATTACCCAGGTAAAGCAACTACACCAGAGGAATTACGAGATGACCTTGATAAAGCT
TTATCACTGATTCCTGGTATGCACCGAGTCAATCTACATGCAATATATGCAGAAACAAATGGAGAAGCCGTGGAACGTGA
TGAGATTGAGCCTAAGCATTTTGAAAACTGGGTAAAATGGGCAAAAGAAAACGGTTTAGGACTTGACTTTAATCCAACAT
TATTTTCTCATCCAAAAGCAGATGACGGTTTAACGTTAGCACACCCAAATAAAGAGATTCGAGATTTTTGGATTCGTCAT
ACGATTGCCAGCCGTAAAATAGCGGCTTACATGGGGAAAGAGTTAGGGACTTCTGCCTTAACAAACATCTGGACTCCAGA
TGGATATAAAGATATCCCAAGTGATCGTCTGACACCTAGAAAACGTCTAGAAGATTCCCTAAACCAAATATTTGAAGAGG
AAATAGATAAGGAATATAACGTTGACGCAGTAGAGAGCAAACTATTTGGAATAGGATCGGAAGCATATGTAGTAGGTTCA
CATGAGTTTTATATGGGATATGCATTGAAAAATAATAAATTATGTCTACTAGATACAGGACATTATCATCCTACAGAAAT
GGTATCTAATAAAATTTCTTCGATGCTATTATATAGTGATGAATTAGCTTTACATGTATCTAGACCAGTTCGTTGGGATA
GTGATCATGTTGTTATATTAGATGATGAATTACGTGAAATTGGCTTAGAGATTGTCCGAAATGATGCTTTAGATAAAGTT
AGAATCGGCCTTGATTTCTTTGATGCAAGCATAAACCGAATTGCAGCATGGACAATCGGTACTCGGAATATGATTAAATC
GTTATTATATGCGTTACTAACACCGAACGAGCATTTAAAACAATTACAAGAAGAAGGTAACTTCACAGATCGCTTAGCGA
TAATGGAAGAATTAAAAACTTATCCATTTGGGGCTATTTGGGATTACTACTGTGAATCCATGAATGTACCAGTTGGAGAG
TCATGGTTAACAGAGGTAAAAGAATATGAAAAAGAAGTTTTATCTAAGCGATAA

Upstream 100 bases:

>100_bases
TGGCAATCGATCAAATAGATGATATGCAACAAGCTAGACAAATTATTAAACATTCATTTGATTTATATACCTATGCAAAA
GTAACGATGGAGGGGTAAAT

Downstream 100 bases:

>100_bases
TTTTAAGAGGATTTGAAGTGGAAAGGGAGAGAATGATGACACAGGATATTACACAACAAGATGTGTTAGATGCACCTTTT
ATGAAAGAAATGATGAATAC

Product: L-rhamnose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MDVKQNYEQAKKQYEKWGVNVEDALEKLKQIPISIHCWQGDDVTGFEVNQQELSGGIDVTGNYPGKATTPEELRDDLDKA
LSLIPGMHRVNLHAIYAETNGEAVERDEIEPKHFENWVKWAKENGLGLDFNPTLFSHPKADDGLTLAHPNKEIRDFWIRH
TIASRKIAAYMGKELGTSALTNIWTPDGYKDIPSDRLTPRKRLEDSLNQIFEEEIDKEYNVDAVESKLFGIGSEAYVVGS
HEFYMGYALKNNKLCLLDTGHYHPTEMVSNKISSMLLYSDELALHVSRPVRWDSDHVVILDDELREIGLEIVRNDALDKV
RIGLDFFDASINRIAAWTIGTRNMIKSLLYALLTPNEHLKQLQEEGNFTDRLAIMEELKTYPFGAIWDYYCESMNVPVGE
SWLTEVKEYEKEVLSKR

Sequences:

>Translated_417_residues
MDVKQNYEQAKKQYEKWGVNVEDALEKLKQIPISIHCWQGDDVTGFEVNQQELSGGIDVTGNYPGKATTPEELRDDLDKA
LSLIPGMHRVNLHAIYAETNGEAVERDEIEPKHFENWVKWAKENGLGLDFNPTLFSHPKADDGLTLAHPNKEIRDFWIRH
TIASRKIAAYMGKELGTSALTNIWTPDGYKDIPSDRLTPRKRLEDSLNQIFEEEIDKEYNVDAVESKLFGIGSEAYVVGS
HEFYMGYALKNNKLCLLDTGHYHPTEMVSNKISSMLLYSDELALHVSRPVRWDSDHVVILDDELREIGLEIVRNDALDKV
RIGLDFFDASINRIAAWTIGTRNMIKSLLYALLTPNEHLKQLQEEGNFTDRLAIMEELKTYPFGAIWDYYCESMNVPVGE
SWLTEVKEYEKEVLSKR
>Mature_417_residues
MDVKQNYEQAKKQYEKWGVNVEDALEKLKQIPISIHCWQGDDVTGFEVNQQELSGGIDVTGNYPGKATTPEELRDDLDKA
LSLIPGMHRVNLHAIYAETNGEAVERDEIEPKHFENWVKWAKENGLGLDFNPTLFSHPKADDGLTLAHPNKEIRDFWIRH
TIASRKIAAYMGKELGTSALTNIWTPDGYKDIPSDRLTPRKRLEDSLNQIFEEEIDKEYNVDAVESKLFGIGSEAYVVGS
HEFYMGYALKNNKLCLLDTGHYHPTEMVSNKISSMLLYSDELALHVSRPVRWDSDHVVILDDELREIGLEIVRNDALDKV
RIGLDFFDASINRIAAWTIGTRNMIKSLLYALLTPNEHLKQLQEEGNFTDRLAIMEELKTYPFGAIWDYYCESMNVPVGE
SWLTEVKEYEKEVLSKR

Specific function: Metabolism of L-rhamnose; first step. [C]

COG id: COG4806

COG function: function code G; L-rhamnose isomerase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family

Homologues:

Organism=Escherichia coli, GI48994990, Length=415, Percent_Identity=57.1084337349398, Blast_Score=525, Evalue=1e-150,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHAA_OCEIH (Q8ESX0)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_691417.1
- ProteinModelPortal:   Q8ESX0
- SMR:   Q8ESX0
- GeneID:   1015765
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB0496
- NMPDR:   fig|221109.1.peg.500
- HOGENOM:   HBG313138
- OMA:   VNLHAIY
- ProtClustDB:   PRK01076
- BioCyc:   OIHE221109:OB0496-MONOMER
- BRENDA:   5.3.1.14
- GO:   GO:0005737
- HAMAP:   MF_00541
- InterPro:   IPR009308
- InterPro:   IPR013022
- Gene3D:   G3DSA:3.20.20.150
- TIGRFAMs:   TIGR01748

Pfam domain/function: PF06134 RhaA; SSF51658 Xyl_isomerase-like_TIM-brl

EC number: =5.3.1.14

Molecular weight: Translated: 47814; Mature: 47814

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVKQNYEQAKKQYEKWGVNVEDALEKLKQIPISIHCWQGDDVTGFEVNQQELSGGIDVT
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE
GNYPGKATTPEELRDDLDKALSLIPGMHRVNLHAIYAETNGEAVERDEIEPKHFENWVKW
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
AKENGLGLDFNPTLFSHPKADDGLTLAHPNKEIRDFWIRHTIASRKIAAYMGKELGTSAL
HHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
TNIWTPDGYKDIPSDRLTPRKRLEDSLNQIFEEEIDKEYNVDAVESKLFGIGSEAYVVGS
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEC
HEFYMGYALKNNKLCLLDTGHYHPTEMVSNKISSMLLYSDELALHVSRPVRWDSDHVVIL
CEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCEEEE
DDELREIGLEIVRNDALDKVRIGLDFFDASINRIAAWTIGTRNMIKSLLYALLTPNEHLK
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCHHHHH
QLQEEGNFTDRLAIMEELKTYPFGAIWDYYCESMNVPVGESWLTEVKEYEKEVLSKR
HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVKQNYEQAKKQYEKWGVNVEDALEKLKQIPISIHCWQGDDVTGFEVNQQELSGGIDVT
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE
GNYPGKATTPEELRDDLDKALSLIPGMHRVNLHAIYAETNGEAVERDEIEPKHFENWVKW
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
AKENGLGLDFNPTLFSHPKADDGLTLAHPNKEIRDFWIRHTIASRKIAAYMGKELGTSAL
HHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
TNIWTPDGYKDIPSDRLTPRKRLEDSLNQIFEEEIDKEYNVDAVESKLFGIGSEAYVVGS
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEC
HEFYMGYALKNNKLCLLDTGHYHPTEMVSNKISSMLLYSDELALHVSRPVRWDSDHVVIL
CEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCEEEE
DDELREIGLEIVRNDALDKVRIGLDFFDASINRIAAWTIGTRNMIKSLLYALLTPNEHLK
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCHHHHH
QLQEEGNFTDRLAIMEELKTYPFGAIWDYYCESMNVPVGESWLTEVKEYEKEVLSKR
HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376