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The map label for this gene is ypdB [H]

Identifier: 23097932

GI number: 23097932

Start: 505143

End: 506183

Strand: Direct

Name: ypdB [H]

Synonym: OB0477

Alternate gene names: 23097932

Gene position: 505143-506183 (Clockwise)

Preceding gene: 23097925

Following gene: 23097933

Centisome position: 13.91

GC content: 32.37

Gene sequence:

>1041_bases
ATGCTTCAATTAAGAGAACTAGAATATCGACAAGGTGACCACATCTTGTTTTCGACGTTTCATTTAACGATTCAAGAAGG
GGAAGTTGCAGCGATTCATTCCTCCTTAAATGTTAGGCAGATGTTAATAAAAATGATTGTTGGAGATAAAAAAATTAATA
ACGGTAGTATCGAATTAAATGGAATTACATTAAAAGATAAAGTGGAGTACTTTCAAGCGTTAGGACTTCAATTATTGAAT
AACGGCCTTTACGAACGGATGAATATAAAAGAATATTTTCGATTTATGGAAAAATTATATCAAACGAATGTCAATCATCA
AGATTTGATTGAAAAATTACAATTACATGAAGTGAAGGATAAGCCAATTAGTAAATTAACAGAGTCTGAACAAAAGCGGG
TTCATTATGGGAAAGCAATTATTCAGGATGCAAGTATTTATCTTTTTGAAGAGCCGGATTTAAATGTTGACTTAGAAACG
AAACGAGTATTGGTTCATGTTTTAAACCATCTTAAGCAGAATAAAAAAGGTGTATTAATACTGACATCCAATATGGAAAG
TGCAATTACATTAGCAGAAAGAGTTTACCGACTTAACGAGGAAGGGTTACAAACAGTTGAAATTAAAACAGAAGAAAACG
AAGAGAAGCAAGAGATAGACGAAGTTTCAGAAGAAGAGTTAGGAAAGCAAGATTTTTCTTTTCAGCTAAATAAAATACCT
TCGAAAGTAAATGACAAGATAGTACTACTTGATCCTCCAGAGATTGACTACATTGAAAGTGATGAAGGTCAAGCTGTAGT
ACATATGAAAGGGTCATCGTTTCGAACAGCATTTACGCTTCGTCAATTAGAAGAAAAATTAGAACATCAAGGATTTTTCC
GATGTCATCGATCTTATATCGTAAATTTACAAAAAGTACGAGAAGTAATTACCTGGACGAGAAATAGTTACAGTCTTGTT
TTGCAAGATAAAGAAAAAACTCAAGTACCTTTATCGAAAGCAAAGTTGGTTGAATTAAAGCAAATTTTAGGAGTCGATTA
A

Upstream 100 bases:

>100_bases
GTTGCTTTTCGTATTTATTTACTTCATATTAACTGTAACAAAATAAATAAATTCTGTCATCTGAATACATAAAATTGGGA
TTCAAAGGGGACTGAGATAG

Downstream 100 bases:

>100_bases
GCTCCATTTAACCTATTAGGTACTCCATTCATCGGAAATTTAGTGCGAAGACCTTGATATAACAGTATTCTGAAGATGCA
AATGAAAATTGGATTTTCAG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MLQLRELEYRQGDHILFSTFHLTIQEGEVAAIHSSLNVRQMLIKMIVGDKKINNGSIELNGITLKDKVEYFQALGLQLLN
NGLYERMNIKEYFRFMEKLYQTNVNHQDLIEKLQLHEVKDKPISKLTESEQKRVHYGKAIIQDASIYLFEEPDLNVDLET
KRVLVHVLNHLKQNKKGVLILTSNMESAITLAERVYRLNEEGLQTVEIKTEENEEKQEIDEVSEEELGKQDFSFQLNKIP
SKVNDKIVLLDPPEIDYIESDEGQAVVHMKGSSFRTAFTLRQLEEKLEHQGFFRCHRSYIVNLQKVREVITWTRNSYSLV
LQDKEKTQVPLSKAKLVELKQILGVD

Sequences:

>Translated_346_residues
MLQLRELEYRQGDHILFSTFHLTIQEGEVAAIHSSLNVRQMLIKMIVGDKKINNGSIELNGITLKDKVEYFQALGLQLLN
NGLYERMNIKEYFRFMEKLYQTNVNHQDLIEKLQLHEVKDKPISKLTESEQKRVHYGKAIIQDASIYLFEEPDLNVDLET
KRVLVHVLNHLKQNKKGVLILTSNMESAITLAERVYRLNEEGLQTVEIKTEENEEKQEIDEVSEEELGKQDFSFQLNKIP
SKVNDKIVLLDPPEIDYIESDEGQAVVHMKGSSFRTAFTLRQLEEKLEHQGFFRCHRSYIVNLQKVREVITWTRNSYSLV
LQDKEKTQVPLSKAKLVELKQILGVD
>Mature_346_residues
MLQLRELEYRQGDHILFSTFHLTIQEGEVAAIHSSLNVRQMLIKMIVGDKKINNGSIELNGITLKDKVEYFQALGLQLLN
NGLYERMNIKEYFRFMEKLYQTNVNHQDLIEKLQLHEVKDKPISKLTESEQKRVHYGKAIIQDASIYLFEEPDLNVDLET
KRVLVHVLNHLKQNKKGVLILTSNMESAITLAERVYRLNEEGLQTVEIKTEENEEKQEIDEVSEEELGKQDFSFQLNKIP
SKVNDKIVLLDPPEIDYIESDEGQAVVHMKGSSFRTAFTLRQLEEKLEHQGFFRCHRSYIVNLQKVREVITWTRNSYSLV
LQDKEKTQVPLSKAKLVELKQILGVD

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=102, Percent_Identity=35.2941176470588, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 40310; Mature: 40310

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS50930 HTH_LYTTR ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQLRELEYRQGDHILFSTFHLTIQEGEVAAIHSSLNVRQMLIKMIVGDKKINNGSIELN
CCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEHHCCHHHHHHHHHHHCCCCCCCCEEEEE
GITLKDKVEYFQALGLQLLNNGLYERMNIKEYFRFMEKLYQTNVNHQDLIEKLQLHEVKD
EEEHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
KPISKLTESEQKRVHYGKAIIQDASIYLFEEPDLNVDLETKRVLVHVLNHLKQNKKGVLI
CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
LTSNMESAITLAERVYRLNEEGLQTVEIKTEENEEKQEIDEVSEEELGKQDFSFQLNKIP
EECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEHHHCC
SKVNDKIVLLDPPEIDYIESDEGQAVVHMKGSSFRTAFTLRQLEEKLEHQGFFRCHRSYI
CCCCCEEEEECCCCCCCEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VNLQKVREVITWTRNSYSLVLQDKEKTQVPLSKAKLVELKQILGVD
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQLRELEYRQGDHILFSTFHLTIQEGEVAAIHSSLNVRQMLIKMIVGDKKINNGSIELN
CCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEHHCCHHHHHHHHHHHCCCCCCCCEEEEE
GITLKDKVEYFQALGLQLLNNGLYERMNIKEYFRFMEKLYQTNVNHQDLIEKLQLHEVKD
EEEHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
KPISKLTESEQKRVHYGKAIIQDASIYLFEEPDLNVDLETKRVLVHVLNHLKQNKKGVLI
CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
LTSNMESAITLAERVYRLNEEGLQTVEIKTEENEEKQEIDEVSEEELGKQDFSFQLNKIP
EECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEHHHCC
SKVNDKIVLLDPPEIDYIESDEGQAVVHMKGSSFRTAFTLRQLEEKLEHQGFFRCHRSYI
CCCCCEEEEECCCCCCCEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VNLQKVREVITWTRNSYSLVLQDKEKTQVPLSKAKLVELKQILGVD
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]