Definition | Exiguobacterium sp. AT1b, complete genome. |
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Accession | NC_012673 |
Length | 2,999,895 |
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The map label for this gene is yueF [H]
Identifier: 229918356
GI number: 229918356
Start: 2607111
End: 2608280
Strand: Direct
Name: yueF [H]
Synonym: EAT1b_2641
Alternate gene names: 229918356
Gene position: 2607111-2608280 (Clockwise)
Preceding gene: 229918355
Following gene: 229918357
Centisome position: 86.91
GC content: 47.61
Gene sequence:
>1170_bases ATGCAACGCATGTTTGAAAACAAATGGTATCGCGCCCTCTTTTGGACGCTGACCATCTTTTTAGTCATTTGGGTCGGGAC ACAGATCTCATTCGTGTTTGAACCGATTCAAGTTATTTTGGCACTCGTCACGGTTCCGCTTATTGTGGCCGGACTCTTCT TTTATTTCCTGGTCGGGATTGTCGACTTCTTAGAGAAACGCTTAAAAGGGAAGAGAACACTAGCTGTAGCCATCACACTG ATCGGACTCGTGCTTATTTTTACACTTGTCTTCAGTATTCTCGGACCGGTTTTAGGCGAACAAATCACGTCGCTCGTCAA CGCTATGCCGAGTATCGCAAAAGAACTTCAGAAACAGGCGTTCGCTGTCCGTGACACGTTGCTACAAAATGAGTTCTTTG CACGCTTCATGGCAGAAAATGACGAGATGTTCCGTAACTTGACGACGAACATTACGTCGTACTTAGGAGACTTATTCGGA AACATTGCCTCATCATTCGGTCAAGTCGTCGGATTCGTGACGTCAGCTGTCATCACGATCGTCGTCATTCCGTTCATGCT TCTCTACATGTTGCTCGACGGGAAACGCTTGCCGGACGCTATCGTCAAACTCTTACCATCGAGCTATGAGAAAGAGACAC GTCACATCTTGCATGACATGCACGAGACGGTGCGGAGTTACGTCAACGCTCAGTTGCTCGTCGCATTCTTCGTCGGAATC ACGTCACTGATCGGTCTATGGATCGTCGGTGTAGATTATGCCATCTTGCTCGCACTTTTCATGATGGTAACAAATATCAT CCCTTACGTTGGACCGTTCCTAGGGGCTGCACCAGCAGTGGTCGTGGCATTCATTCAAGATCCAATCAAGGTATTATGGG TCATCGTTGTCATCATCGTCGTGCAACAGATTGAGTCGAACGTCATCTCGCCACTCATTCAAGGGAAGTCGTTAAAAGTA CACCCGCTCACGATCATCATTGTCTTGCTCGTGGCCGGGAATTTGGCCGGCATCATCGGAATGCTCATCGCTGTACCGTT CTATGCGGTCGCCAAAACGGTTGTCCAGAATATCGTTCGCATCTATAAATTACGAGAACGAGAACATTATTTGGATAAAG AGGAGCCTGAGAGTCCGATTATCACGGACCCGAACTCGCCAAATCCATAA
Upstream 100 bases:
>100_bases AAGGGATTCCTTCGCCTTTTTGTTTTTGTCAGCCCGCAAGCGGGTAATTATCGTATAATCATAGTTAGTACATAGTCATC ATTGTAAACGAGGTGGAGAA
Downstream 100 bases:
>100_bases GAAGAAAGGGTAGGAGTGGAGTTTCGCCATTTCTACTTCTTTTTGTCACAAAAAGTTCTTATTTTATTTCAGGAAAATCA AACAGAAGATTATAGTTACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MQRMFENKWYRALFWTLTIFLVIWVGTQISFVFEPIQVILALVTVPLIVAGLFFYFLVGIVDFLEKRLKGKRTLAVAITL IGLVLIFTLVFSILGPVLGEQITSLVNAMPSIAKELQKQAFAVRDTLLQNEFFARFMAENDEMFRNLTTNITSYLGDLFG NIASSFGQVVGFVTSAVITIVVIPFMLLYMLLDGKRLPDAIVKLLPSSYEKETRHILHDMHETVRSYVNAQLLVAFFVGI TSLIGLWIVGVDYAILLALFMMVTNIIPYVGPFLGAAPAVVVAFIQDPIKVLWVIVVIIVVQQIESNVISPLIQGKSLKV HPLTIIIVLLVAGNLAGIIGMLIAVPFYAVAKTVVQNIVRIYKLREREHYLDKEEPESPIITDPNSPNP
Sequences:
>Translated_389_residues MQRMFENKWYRALFWTLTIFLVIWVGTQISFVFEPIQVILALVTVPLIVAGLFFYFLVGIVDFLEKRLKGKRTLAVAITL IGLVLIFTLVFSILGPVLGEQITSLVNAMPSIAKELQKQAFAVRDTLLQNEFFARFMAENDEMFRNLTTNITSYLGDLFG NIASSFGQVVGFVTSAVITIVVIPFMLLYMLLDGKRLPDAIVKLLPSSYEKETRHILHDMHETVRSYVNAQLLVAFFVGI TSLIGLWIVGVDYAILLALFMMVTNIIPYVGPFLGAAPAVVVAFIQDPIKVLWVIVVIIVVQQIESNVISPLIQGKSLKV HPLTIIIVLLVAGNLAGIIGMLIAVPFYAVAKTVVQNIVRIYKLREREHYLDKEEPESPIITDPNSPNP >Mature_389_residues MQRMFENKWYRALFWTLTIFLVIWVGTQISFVFEPIQVILALVTVPLIVAGLFFYFLVGIVDFLEKRLKGKRTLAVAITL IGLVLIFTLVFSILGPVLGEQITSLVNAMPSIAKELQKQAFAVRDTLLQNEFFARFMAENDEMFRNLTTNITSYLGDLFG NIASSFGQVVGFVTSAVITIVVIPFMLLYMLLDGKRLPDAIVKLLPSSYEKETRHILHDMHETVRSYVNAQLLVAFFVGI TSLIGLWIVGVDYAILLALFMMVTNIIPYVGPFLGAAPAVVVAFIQDPIKVLWVIVVIIVVQQIESNVISPLIQGKSLKV HPLTIIIVLLVAGNLAGIIGMLIAVPFYAVAKTVVQNIVRIYKLREREHYLDKEEPESPIITDPNSPNP
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI1788838, Length=359, Percent_Identity=26.4623955431755, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI87082271, Length=280, Percent_Identity=22.5, Blast_Score=75, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 43467; Mature: 43467
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRMFENKWYRALFWTLTIFLVIWVGTQISFVFEPIQVILALVTVPLIVAGLFFYFLVGI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDFLEKRLKGKRTLAVAITLIGLVLIFTLVFSILGPVLGEQITSLVNAMPSIAKELQKQA HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAVRDTLLQNEFFARFMAENDEMFRNLTTNITSYLGDLFGNIASSFGQVVGFVTSAVITI HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVIPFMLLYMLLDGKRLPDAIVKLLPSSYEKETRHILHDMHETVRSYVNAQLLVAFFVGI HHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSLIGLWIVGVDYAILLALFMMVTNIIPYVGPFLGAAPAVVVAFIQDPIKVLWVIVVIIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQQIESNVISPLIQGKSLKVHPLTIIIVLLVAGNLAGIIGMLIAVPFYAVAKTVVQNIVR HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYKLREREHYLDKEEPESPIITDPNSPNP HHHHHHHHHCCCCCCCCCCEECCCCCCCC >Mature Secondary Structure MQRMFENKWYRALFWTLTIFLVIWVGTQISFVFEPIQVILALVTVPLIVAGLFFYFLVGI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDFLEKRLKGKRTLAVAITLIGLVLIFTLVFSILGPVLGEQITSLVNAMPSIAKELQKQA HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAVRDTLLQNEFFARFMAENDEMFRNLTTNITSYLGDLFGNIASSFGQVVGFVTSAVITI HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVIPFMLLYMLLDGKRLPDAIVKLLPSSYEKETRHILHDMHETVRSYVNAQLLVAFFVGI HHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSLIGLWIVGVDYAILLALFMMVTNIIPYVGPFLGAAPAVVVAFIQDPIKVLWVIVVIIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQQIESNVISPLIQGKSLKVHPLTIIIVLLVAGNLAGIIGMLIAVPFYAVAKTVVQNIVR HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYKLREREHYLDKEEPESPIITDPNSPNP HHHHHHHHHCCCCCCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]