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The map label for this gene is sdhC [H]

Identifier: 229918342

GI number: 229918342

Start: 2593263

End: 2593880

Strand: Direct

Name: sdhC [H]

Synonym: EAT1b_2627

Alternate gene names: 229918342

Gene position: 2593263-2593880 (Clockwise)

Preceding gene: 229918340

Following gene: 229918343

Centisome position: 86.45

GC content: 47.73

Gene sequence:

>618_bases
ATGGCAGCGCATCGTGACTACTTCAGTCGTAAAGTCCATTCGCTACTTGGGGTCATTCCAATCGGTTTGTTTTTGATCGT
CCATTTGTCGGTCAACTACTACATCGTCGATGGGGTGGAGTCATTCAACAAAGCAGCAAAATTCATGGAGAACTTACCGT
ATTTGTACTTCCTTGAAGTGACAATTATCGCATTGCCGATGATTTTCCACGGGGTGTACGGCGTGTACTATGCGTTTCTC
GGGTCAATCAACTCGAACCGCTATTCATACGCACGTAACTGGTTGTATCTCTTCCAACGCTTCACAGGAGTTTTCCTCGT
GATCTTCATCGCTTGGCACGTTTGGGAAACGCGTCTTGCGAAATTGCGCGGGGTAGAAGTCAATGCGGAGATGATGCAAA
ACATCGTCGACAACCCGCTCATGTTGATCTTCTACATAGTCGGAATTCTTTCGGCTACGTTCCACTTCGCGAACGGTCTT
TGGTCGTTCTCGATCACGTGGGGTATCACACAGTCACCTCGTTCGCAACGTCTCATGAGCTACGTATCAGGTGTCGTGTT
CTTGGCACTATCTTTTGTCGGCATCCGTTCGATTTTGACGTTTGCAGGCATCTTGTAA

Upstream 100 bases:

>100_bases
ATTTTCACAAGAGTAGAATAGGAGACAGAAAGCTATATCTGCATTTGAAAACGCTTTTATTGACAATACGAGCCAATGCT
CGTGAAAAGGGGGAACTAGA

Downstream 100 bases:

>100_bases
TTAGGGGGAATTTTACATGGCAAATCAAAGTTTGATCGTCATCGGTGGCGGTCTAGCTGGACTCATGGCGACAATCAAGT
CGGCAGAGATGGGTGTTCCG

Product: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-558 [H]

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MAAHRDYFSRKVHSLLGVIPIGLFLIVHLSVNYYIVDGVESFNKAAKFMENLPYLYFLEVTIIALPMIFHGVYGVYYAFL
GSINSNRYSYARNWLYLFQRFTGVFLVIFIAWHVWETRLAKLRGVEVNAEMMQNIVDNPLMLIFYIVGILSATFHFANGL
WSFSITWGITQSPRSQRLMSYVSGVVFLALSFVGIRSILTFAGIL

Sequences:

>Translated_205_residues
MAAHRDYFSRKVHSLLGVIPIGLFLIVHLSVNYYIVDGVESFNKAAKFMENLPYLYFLEVTIIALPMIFHGVYGVYYAFL
GSINSNRYSYARNWLYLFQRFTGVFLVIFIAWHVWETRLAKLRGVEVNAEMMQNIVDNPLMLIFYIVGILSATFHFANGL
WSFSITWGITQSPRSQRLMSYVSGVVFLALSFVGIRSILTFAGIL
>Mature_204_residues
AAHRDYFSRKVHSLLGVIPIGLFLIVHLSVNYYIVDGVESFNKAAKFMENLPYLYFLEVTIIALPMIFHGVYGVYYAFLG
SINSNRYSYARNWLYLFQRFTGVFLVIFIAWHVWETRLAKLRGVEVNAEMMQNIVDNPLMLIFYIVGILSATFHFANGLW
SFSITWGITQSPRSQRLMSYVSGVVFLALSFVGIRSILTFAGIL

Specific function: Di-heme cytochrome of the succinate dehydrogenase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b558 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011138
- InterPro:   IPR016002
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 23538; Mature: 23407

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAHRDYFSRKVHSLLGVIPIGLFLIVHLSVNYYIVDGVESFNKAAKFMENLPYLYFLEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCHHHHHHH
TIIALPMIFHGVYGVYYAFLGSINSNRYSYARNWLYLFQRFTGVFLVIFIAWHVWETRLA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRGVEVNAEMMQNIVDNPLMLIFYIVGILSATFHFANGLWSFSITWGITQSPRSQRLMS
HHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
YVSGVVFLALSFVGIRSILTFAGIL
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAHRDYFSRKVHSLLGVIPIGLFLIVHLSVNYYIVDGVESFNKAAKFMENLPYLYFLEV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCHHHHHHH
TIIALPMIFHGVYGVYYAFLGSINSNRYSYARNWLYLFQRFTGVFLVIFIAWHVWETRLA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRGVEVNAEMMQNIVDNPLMLIFYIVGILSATFHFANGLWSFSITWGITQSPRSQRLMS
HHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
YVSGVVFLALSFVGIRSILTFAGIL
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3086287; 8969504; 9384377; 3027051; 3036777; 2120540 [H]