Definition | Exiguobacterium sp. AT1b, complete genome. |
---|---|
Accession | NC_012673 |
Length | 2,999,895 |
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The map label for this gene is merA [H]
Identifier: 229918338
GI number: 229918338
Start: 2588676
End: 2589989
Strand: Reverse
Name: merA [H]
Synonym: EAT1b_2623
Alternate gene names: 229918338
Gene position: 2589989-2588676 (Counterclockwise)
Preceding gene: 229918341
Following gene: 229918321
Centisome position: 86.34
GC content: 52.59
Gene sequence:
>1314_bases ATGAAACGATACGATGTCATCATTGTCGGTAGCGGTTCCGCCGCGAGCCAAGCCGCTTCCATTTTACGCGAAGCCGGTAA AGAGATTGCCATCATTGAGAATTGGACGTTCGGGGGAACATGTCCTCAACGCGGATGTGACCCGAAGAAGATGCTTGCCG AAGGAGCTGAACTTCTTGCTCGAGCGGAACAGATGCGCGAACTCGGCGTCGATGGAAGCCTATCCCTCGATTGGTCGTCC TTTAAAAAGCGGATTGATGAATATCGCTTCTCGATTCCTACGACAAAAACACAACATTGGAACGAGATGAACATTGACTT ATATCAAAGAGAGCCTCACTTTATCGATGAGGATTCCATCGTCATCGATGGTCACGAGCTCTCTGCCAATCAATTTTTAA TCGCTACGGGTCAAACGCCCCGCCCTCTCGATATCCCAGGTGGCGAACTGGCGATTACGAGCGATGATGTGTTCGACCTC GACGTCTTACCTGAATCGATTCACATTGTAGGCGCCGGGTATATCGCCTTTGAGTTTGCCCACATCTTTCGACGATTCGG AAGTGACGTGACCCTTCTTATTCGTTCGCGTGCGTTGAAGGCATTCGACCCGAACGTCGTCCACCGGCTCATTGAGGAAT CGAAGCGAATCGGCATCACCGTCCGACATGACGTCGAACCAACACGAATCGACGGCAACGTCTTGACGTTATCAGATGAC TCTACCCTCGAAGGCGTGGTCCTTAACGCCACCGGGCGAATTCCAAGCATCGAGCGCCTCCGGCTTGAAGCGGCCAGTGT CACAGCTGATCATCACGGTGTACACGTGAACGAGCATCTGCAAACAAGTAACCCGAATATATACGCCGCGGGCGACGTCG CCAAAAGTCCCAATCCTGCGCTCACTCCATTCGCCGGTCAGGAAGGGCGTCTCGCCGCACTCAATATGCTTCACGGGAAT ACACGGGCACTCCCCGAGCGTCCGGCCCCGACCATCGTCTATGCGACGCCGCCGATTGCTAAAGTCGGTCTTACGGTGGA AGAAGCGGAAGCGGAGGGCATTGACTTCGATGTGAAAGAAACGGATATGTCGCACTTCCTCACCTATTCACGAATCAATG ACTCAACCGCCTATTCGAAAGTGTTACTAAGTGCAGAAGGGCACGTCATCGGGGCTCATTTGATTGGTCACCATGCCCCT GAACTCATCAACCTGTTCTCTTTCATTATACAGAACAAACTGTCGCATCAACACGTGAAGCACTTAGAAGTCGCCTATCC GACGGCCGCCTCCGACCTGACCTATCTCATCTAA
Upstream 100 bases:
>100_bases GCTTAATGTGGTCGCTATGACTCAATTCCATTCACCTCAGTTTAGCTTCCTCCTGGACGGGAAAAAGAGTGTGATATCTC GTCAGAGGAGGTTTTATATT
Downstream 100 bases:
>100_bases ACAAAAGACGGGACTCGCCTCGTGGCGAATCCCGTCTTTTACTTATTCGATTCCTTTATCCTTGTCTTCTTTCAGCGCGT CTTGTAACGACTTCTCCCAA
Product: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
Products: NA
Alternate protein names: Hg(II) reductase [H]
Number of amino acids: Translated: 437; Mature: 437
Protein sequence:
>437_residues MKRYDVIIVGSGSAASQAASILREAGKEIAIIENWTFGGTCPQRGCDPKKMLAEGAELLARAEQMRELGVDGSLSLDWSS FKKRIDEYRFSIPTTKTQHWNEMNIDLYQREPHFIDEDSIVIDGHELSANQFLIATGQTPRPLDIPGGELAITSDDVFDL DVLPESIHIVGAGYIAFEFAHIFRRFGSDVTLLIRSRALKAFDPNVVHRLIEESKRIGITVRHDVEPTRIDGNVLTLSDD STLEGVVLNATGRIPSIERLRLEAASVTADHHGVHVNEHLQTSNPNIYAAGDVAKSPNPALTPFAGQEGRLAALNMLHGN TRALPERPAPTIVYATPPIAKVGLTVEEAEAEGIDFDVKETDMSHFLTYSRINDSTAYSKVLLSAEGHVIGAHLIGHHAP ELINLFSFIIQNKLSHQHVKHLEVAYPTAASDLTYLI
Sequences:
>Translated_437_residues MKRYDVIIVGSGSAASQAASILREAGKEIAIIENWTFGGTCPQRGCDPKKMLAEGAELLARAEQMRELGVDGSLSLDWSS FKKRIDEYRFSIPTTKTQHWNEMNIDLYQREPHFIDEDSIVIDGHELSANQFLIATGQTPRPLDIPGGELAITSDDVFDL DVLPESIHIVGAGYIAFEFAHIFRRFGSDVTLLIRSRALKAFDPNVVHRLIEESKRIGITVRHDVEPTRIDGNVLTLSDD STLEGVVLNATGRIPSIERLRLEAASVTADHHGVHVNEHLQTSNPNIYAAGDVAKSPNPALTPFAGQEGRLAALNMLHGN TRALPERPAPTIVYATPPIAKVGLTVEEAEAEGIDFDVKETDMSHFLTYSRINDSTAYSKVLLSAEGHVIGAHLIGHHAP ELINLFSFIIQNKLSHQHVKHLEVAYPTAASDLTYLI >Mature_437_residues MKRYDVIIVGSGSAASQAASILREAGKEIAIIENWTFGGTCPQRGCDPKKMLAEGAELLARAEQMRELGVDGSLSLDWSS FKKRIDEYRFSIPTTKTQHWNEMNIDLYQREPHFIDEDSIVIDGHELSANQFLIATGQTPRPLDIPGGELAITSDDVFDL DVLPESIHIVGAGYIAFEFAHIFRRFGSDVTLLIRSRALKAFDPNVVHRLIEESKRIGITVRHDVEPTRIDGNVLTLSDD STLEGVVLNATGRIPSIERLRLEAASVTADHHGVHVNEHLQTSNPNIYAAGDVAKSPNPALTPFAGQEGRLAALNMLHGN TRALPERPAPTIVYATPPIAKVGLTVEEAEAEGIDFDVKETDMSHFLTYSRINDSTAYSKVLLSAEGHVIGAHLIGHHAP ELINLFSFIIQNKLSHQHVKHLEVAYPTAASDLTYLI
Specific function: Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0) [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HMA domain [H]
Homologues:
Organism=Homo sapiens, GI22035672, Length=461, Percent_Identity=29.2841648590022, Blast_Score=155, Evalue=7e-38, Organism=Homo sapiens, GI50301238, Length=464, Percent_Identity=29.0948275862069, Blast_Score=149, Evalue=5e-36, Organism=Homo sapiens, GI291045266, Length=471, Percent_Identity=27.3885350318471, Blast_Score=148, Evalue=9e-36, Organism=Homo sapiens, GI148277065, Length=435, Percent_Identity=27.816091954023, Blast_Score=146, Evalue=3e-35, Organism=Homo sapiens, GI33519430, Length=435, Percent_Identity=28.5057471264368, Blast_Score=146, Evalue=4e-35, Organism=Homo sapiens, GI33519428, Length=435, Percent_Identity=28.5057471264368, Blast_Score=146, Evalue=4e-35, Organism=Homo sapiens, GI33519426, Length=435, Percent_Identity=28.5057471264368, Blast_Score=146, Evalue=4e-35, Organism=Homo sapiens, GI148277071, Length=435, Percent_Identity=28.5057471264368, Blast_Score=146, Evalue=5e-35, Organism=Homo sapiens, GI291045268, Length=464, Percent_Identity=25.8620689655172, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI91199540, Length=459, Percent_Identity=26.797385620915, Blast_Score=115, Evalue=1e-25, Organism=Escherichia coli, GI1789915, Length=426, Percent_Identity=29.5774647887324, Blast_Score=165, Evalue=5e-42, Organism=Escherichia coli, GI87082354, Length=449, Percent_Identity=28.9532293986637, Blast_Score=142, Evalue=6e-35, Organism=Escherichia coli, GI1786307, Length=455, Percent_Identity=24.6153846153846, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI87081717, Length=458, Percent_Identity=27.0742358078603, Blast_Score=106, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17557007, Length=475, Percent_Identity=27.7894736842105, Blast_Score=188, Evalue=4e-48, Organism=Caenorhabditis elegans, GI71983429, Length=369, Percent_Identity=32.520325203252, Blast_Score=136, Evalue=2e-32, Organism=Caenorhabditis elegans, GI71983419, Length=369, Percent_Identity=32.520325203252, Blast_Score=136, Evalue=2e-32, Organism=Caenorhabditis elegans, GI71982272, Length=482, Percent_Identity=26.1410788381743, Blast_Score=122, Evalue=3e-28, Organism=Caenorhabditis elegans, GI32565766, Length=459, Percent_Identity=26.3616557734205, Blast_Score=112, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6325166, Length=466, Percent_Identity=25.9656652360515, Blast_Score=140, Evalue=3e-34, Organism=Saccharomyces cerevisiae, GI6321091, Length=461, Percent_Identity=26.2472885032538, Blast_Score=112, Evalue=8e-26, Organism=Saccharomyces cerevisiae, GI6325240, Length=468, Percent_Identity=22.8632478632479, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI24640553, Length=478, Percent_Identity=29.0794979079498, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI24640549, Length=478, Percent_Identity=29.0794979079498, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI24640551, Length=478, Percent_Identity=29.0794979079498, Blast_Score=159, Evalue=3e-39, Organism=Drosophila melanogaster, GI17737741, Length=475, Percent_Identity=26.7368421052632, Blast_Score=148, Evalue=7e-36, Organism=Drosophila melanogaster, GI21358499, Length=459, Percent_Identity=26.1437908496732, Blast_Score=119, Evalue=6e-27,
Paralogues:
None
Copy number: 650 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR017969 - InterPro: IPR006121 - InterPro: IPR000815 - InterPro: IPR021179 - InterPro: IPR004099 - InterPro: IPR012999 - InterPro: IPR001327 [H]
Pfam domain/function: PF00403 HMA; PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.16.1.1 [H]
Molecular weight: Translated: 48023; Mature: 48023
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRYDVIIVGSGSAASQAASILREAGKEIAIIENWTFGGTCPQRGCDPKKMLAEGAELLA CCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH RAEQMRELGVDGSLSLDWSSFKKRIDEYRFSIPTTKTQHWNEMNIDLYQREPHFIDEDSI HHHHHHHHCCCCCEEECHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEECCCCEECCCCE VIDGHELSANQFLIATGQTPRPLDIPGGELAITSDDVFDLDVLPESIHIVGAGYIAFEFA EEECCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCEEEEEECHHHHHHHH HIFRRFGSDVTLLIRSRALKAFDPNVVHRLIEESKRIGITVRHDVEPTRIDGNVLTLSDD HHHHHHCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHEEEEEEECCCCEEECCEEEEECCC STLEGVVLNATGRIPSIERLRLEAASVTADHHGVHVNEHLQTSNPNIYAAGDVAKSPNPA CCCCEEEEECCCCCCCHHHHEEEHHHEECCCCCEEECCCEECCCCCEEEECCCCCCCCCC LTPFAGQEGRLAALNMLHGNTRALPERPAPTIVYATPPIAKVGLTVEEAEAEGIDFDVKE CCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCHHHCCEEECCCCCCCCCCCCC TDMSHFLTYSRINDSTAYSKVLLSAEGHVIGAHLIGHHAPELINLFSFIIQNKLSHQHVK CCHHHHEEEECCCCCHHHHEEEEECCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHH HLEVAYPTAASDLTYLI HEEEECCCCCCCCEEEC >Mature Secondary Structure MKRYDVIIVGSGSAASQAASILREAGKEIAIIENWTFGGTCPQRGCDPKKMLAEGAELLA CCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH RAEQMRELGVDGSLSLDWSSFKKRIDEYRFSIPTTKTQHWNEMNIDLYQREPHFIDEDSI HHHHHHHHCCCCCEEECHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEECCCCEECCCCE VIDGHELSANQFLIATGQTPRPLDIPGGELAITSDDVFDLDVLPESIHIVGAGYIAFEFA EEECCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCEEEEEECHHHHHHHH HIFRRFGSDVTLLIRSRALKAFDPNVVHRLIEESKRIGITVRHDVEPTRIDGNVLTLSDD HHHHHHCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHEEEEEEECCCCEEECCEEEEECCC STLEGVVLNATGRIPSIERLRLEAASVTADHHGVHVNEHLQTSNPNIYAAGDVAKSPNPA CCCCEEEEECCCCCCCHHHHEEEHHHEECCCCCEEECCCEECCCCCEEEECCCCCCCCCC LTPFAGQEGRLAALNMLHGNTRALPERPAPTIVYATPPIAKVGLTVEEAEAEGIDFDVKE CCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCHHHCCEEECCCCCCCCCCCCC TDMSHFLTYSRINDSTAYSKVLLSAEGHVIGAHLIGHHAPELINLFSFIIQNKLSHQHVK CCHHHHEEEECCCCCHHHHEEEEECCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHH HLEVAYPTAASDLTYLI HEEEECCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3037534 [H]