Definition | Exiguobacterium sp. AT1b, complete genome. |
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Accession | NC_012673 |
Length | 2,999,895 |
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The map label for this gene is 229918272
Identifier: 229918272
GI number: 229918272
Start: 2515652
End: 2516560
Strand: Reverse
Name: 229918272
Synonym: EAT1b_2555
Alternate gene names: NA
Gene position: 2516560-2515652 (Counterclockwise)
Preceding gene: 229918276
Following gene: 229918271
Centisome position: 83.89
GC content: 54.79
Gene sequence:
>909_bases ATGATGCGTCGACGCATCCTCGTTCCGAGTGCCGTCTTGGCGAGCGTCGGAACGTTTCTCTATACACGATTCAAACGACG GCTCCCCCGTCCGCGCTTTAAATGGCCGGAACGTCCAGAACTGACAACCATTGATGAGACGCATGTGCAGGCAACGTGGA TCGGGCATTCGACAGTCCTCATTCATTGGTATGGGCTCAAGATTTTAACGGACCCCGTCTTCTCAAAACGAATCGGTGTC CATCTCGGACCGCTGACAGTCGGCATGAAACGTCACACCGCTCCGGCCCTCTCCATTGAGGAGGTCGGCCCGGTCGATGT CATCCTACTCAGCCATGCCCATATGGACCACTTTGACCATAAAAGTTTGAAGCGACTCATCACTCGCGAAACGATTGTCG TCTCTGCTCCTGGGACGAGCCGCCTGTTGCGCCGATACCCAAGTCTGCAGACGCTCGAACTGCATCCACATGACAAAGTG ACACTTGCGAACGGGCTCGATGTCCGCGCCATTCCCGTCAAGCATTGGGGCAACCGTTTTCCGTGGGACAAACATATGGG CTATAACGGGTATTTGCTCAAATACAAAGGGATTCGTATGCTCTTCGCAGGAGACACGGCGTATACCGACTCCTTCAAAG GACTTGCTGACCGTGAACCGATCGACCTCGCCTTCTTCCCCATCGGTGCCTACCAACCGGACTCGTTCCAGGAAGCGCAC TGTACTCCGGAACAGGCTTGGATGATGTACAAAGAGAGTGGAGCGAAGCGTTTCTTCCCGATGCATTGGGACACGTTCGT CCTTTCTTATGAGCCTGTCGAGGAACCGTATCATCGTCTCGTCGCGGCCGCAAAACTCGACCGTGACCAAATTGTGATCA AGGCGCACGGGGAAAGCATCCGTCTGTAG
Upstream 100 bases:
>100_bases GTGTACCCCACAATCTCCCATTTTTTCTACTCCTTTAGGCGGATGCGGTGCATCTGTCCTCGCGATATGATGACAGTATA TTCGAACAGTGAGGTGATGC
Downstream 100 bases:
>100_bases TTTTTCCTTTCCCTTCATCCAAAATTTCGGTAACGTTATAGACGAGAGGGAGGGATTTTTTATGGAATGGACGACGTTGA ATAATGACGTCAAGATGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MMRRRILVPSAVLASVGTFLYTRFKRRLPRPRFKWPERPELTTIDETHVQATWIGHSTVLIHWYGLKILTDPVFSKRIGV HLGPLTVGMKRHTAPALSIEEVGPVDVILLSHAHMDHFDHKSLKRLITRETIVVSAPGTSRLLRRYPSLQTLELHPHDKV TLANGLDVRAIPVKHWGNRFPWDKHMGYNGYLLKYKGIRMLFAGDTAYTDSFKGLADREPIDLAFFPIGAYQPDSFQEAH CTPEQAWMMYKESGAKRFFPMHWDTFVLSYEPVEEPYHRLVAAAKLDRDQIVIKAHGESIRL
Sequences:
>Translated_302_residues MMRRRILVPSAVLASVGTFLYTRFKRRLPRPRFKWPERPELTTIDETHVQATWIGHSTVLIHWYGLKILTDPVFSKRIGV HLGPLTVGMKRHTAPALSIEEVGPVDVILLSHAHMDHFDHKSLKRLITRETIVVSAPGTSRLLRRYPSLQTLELHPHDKV TLANGLDVRAIPVKHWGNRFPWDKHMGYNGYLLKYKGIRMLFAGDTAYTDSFKGLADREPIDLAFFPIGAYQPDSFQEAH CTPEQAWMMYKESGAKRFFPMHWDTFVLSYEPVEEPYHRLVAAAKLDRDQIVIKAHGESIRL >Mature_302_residues MMRRRILVPSAVLASVGTFLYTRFKRRLPRPRFKWPERPELTTIDETHVQATWIGHSTVLIHWYGLKILTDPVFSKRIGV HLGPLTVGMKRHTAPALSIEEVGPVDVILLSHAHMDHFDHKSLKRLITRETIVVSAPGTSRLLRRYPSLQTLELHPHDKV TLANGLDVRAIPVKHWGNRFPWDKHMGYNGYLLKYKGIRMLFAGDTAYTDSFKGLADREPIDLAFFPIGAYQPDSFQEAH CTPEQAWMMYKESGAKRFFPMHWDTFVLSYEPVEEPYHRLVAAAKLDRDQIVIKAHGESIRL
Specific function: Unknown
COG id: COG2220
COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To K.pneumoniae romA [H]
Homologues:
Organism=Homo sapiens, GI170932483, Length=281, Percent_Identity=31.6725978647687, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI170932481, Length=281, Percent_Identity=31.6725978647687, Blast_Score=119, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17543102, Length=256, Percent_Identity=29.6875, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17543100, Length=256, Percent_Identity=29.6875, Blast_Score=107, Evalue=9e-24, Organism=Caenorhabditis elegans, GI25148824, Length=256, Percent_Identity=29.6875, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17543104, Length=253, Percent_Identity=30.0395256916996, Blast_Score=98, Evalue=5e-21, Organism=Saccharomyces cerevisiae, GI6325154, Length=247, Percent_Identity=32.7935222672065, Blast_Score=100, Evalue=3e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34810; Mature: 34810
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRRRILVPSAVLASVGTFLYTRFKRRLPRPRFKWPERPELTTIDETHVQATWIGHSTVL CCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEEECCEEEE IHWYGLKILTDPVFSKRIGVHLGPLTVGMKRHTAPALSIEEVGPVDVILLSHAHMDHFDH EEEECEEEEECCHHHHHCCEEECCEEECCHHCCCCCCCHHHCCCEEEEEEECCCCCCCCH KSLKRLITRETIVVSAPGTSRLLRRYPSLQTLELHPHDKVTLANGLDVRAIPVKHWGNRF HHHHHHHHHCEEEEECCCHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEEEHHHCCCCC PWDKHMGYNGYLLKYKGIRMLFAGDTAYTDSFKGLADREPIDLAFFPIGAYQPDSFQEAH CCHHCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC CTPEQAWMMYKESGAKRFFPMHWDTFVLSYEPVEEPYHRLVAAAKLDRDQIVIKAHGESI CCHHHHHHHEECCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCC RL CC >Mature Secondary Structure MMRRRILVPSAVLASVGTFLYTRFKRRLPRPRFKWPERPELTTIDETHVQATWIGHSTVL CCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEEECCEEEE IHWYGLKILTDPVFSKRIGVHLGPLTVGMKRHTAPALSIEEVGPVDVILLSHAHMDHFDH EEEECEEEEECCHHHHHCCEEECCEEECCHHCCCCCCCHHHCCCEEEEEEECCCCCCCCH KSLKRLITRETIVVSAPGTSRLLRRYPSLQTLELHPHDKVTLANGLDVRAIPVKHWGNRF HHHHHHHHHCEEEEECCCHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEEEHHHCCCCC PWDKHMGYNGYLLKYKGIRMLFAGDTAYTDSFKGLADREPIDLAFFPIGAYQPDSFQEAH CCHHCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC CTPEQAWMMYKESGAKRFFPMHWDTFVLSYEPVEEPYHRLVAAAKLDRDQIVIKAHGESI CCHHHHHHHEECCCCCEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCC RL CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]